Basic Information:

  VIRBase ID:  

VHID00384756

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          TNS1:  NM_001308023     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	TNS1
miRBase Accession/Entrez ID	MIMAT0003719	7145
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MST091//MST122//MST127//MSTP091//MSTP122//MSTP127//MXRA6//PPP1R155//TNS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNS1	chr2:218779295(-) A-I      intronic chr2:218759188(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNS1	chr2:218664809-218664810(-) m6A 3'UTR       27773535 chr2:218664823-218664824(-) m6A 3'UTR       27773535 chr2:218664914-218664915(-) m6A 3'UTR       27773535 chr2:218665987-218665988(-) m6A 3'UTR       - chr2:218666001-218666002(-) m6A 3'UTR       - chr2:218666162-218666163(-) m6A 3'UTR       24284625 chr2:218666179-218666180(-) m6A 3'UTR       24284625 chr2:218667555-218667556(-) m6A 3'UTR       27773535 chr2:218667635-218667636(-) m6A 3'UTR       24284625//27773535 chr2:218667665-218667666(-) m6A 3'UTR       24284625//24981863//27773535 chr2:218667686-218667687(-) m6A 3'UTR       24284625//24981863//27773535 chr2:218667698-218667699(-) m6A 3'UTR       24284625//24981863//27773535 chr2:218668538-218668539(-) m6A 3'UTR//exon       24284625//27773535 chr2:218668655-218668656(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960 chr2:218668680-218668681(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535 chr2:218668695-218668696(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960 chr2:218668711-218668712(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668716-218668717(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668845-218668846(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668911-218668912(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668927-218668928(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668936-218668937(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218668962-218668963(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218669088-218669089(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960 chr2:218669101-218669102(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218669126-218669127(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218669180-218669181(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960 chr2:218669284-218669285(-) m6A CDS//exon       24284625 chr2:218672819-218672820(-) m6A CDS//exon       - chr2:218674620-218674621(-) m6A CDS//exon       24284625 chr2:218674683-218674684(-) m6A CDS//exon       24284625 chr2:218674980-218674981(-) m6A CDS//exon       24284625 chr2:218674990-218674991(-) m6A CDS//exon       24284625 chr2:218677095-218677096(-) m6A CDS//exon       24284625 chr2:218677942-218677943(-) m6A CDS//exon       24284625 chr2:218677988-218677989(-) m6A CDS//exon       24284625 chr2:218682555-218682556(-) m6A CDS       24284625 chr2:218682743-218682744(-) m6A CDS       24284625//25456834//24981863//22575960 chr2:218682789-218682790(-) m6A CDS       24284625//25456834//24981863//22575960 chr2:218683192-218683193(-) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:218683353-218683354(-) m6A CDS       24284625//24981863//22575960 chr2:218683379-218683380(-) m6A CDS       24284625//24981863//22575960 chr2:218686529-218686530(-) m6A CDS       22575960 chr2:218691575-218691576(-) Cm intron       - chr2:218700852-218700853(-) m6A CDS       24284625 chr2:218700863-218700864(-) m6A CDS       24284625 chr2:218712286-218712287(-) m6A CDS       24284625//27773535 chr2:218712297-218712298(-) m6A CDS       24284625//27773535 chr2:218712541-218712542(-) m6A CDS       24284625//24209618//24981863//27773535//22575960 chr2:218712711-218712712(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218712733-218712734(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218712746-218712747(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218712802-218712803(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr2:218712926-218712927(-) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:218712986-218712987(-) m6A CDS       24284625//24981863//22575960 chr2:218713230-218713231(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773536//22575960 chr2:218713344-218713345(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr2:218713372-218713373(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960 chr2:218713542-218713543(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr2:218713612-218713613(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr2:218713621-218713622(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960 chr2:218713673-218713674(-) m6A CDS//exon       24284625//27773535 chr2:218713746-218713747(-) m6A CDS//exon       24284625//27773535 chr2:218713799-218713800(-) m6A CDS//exon       24284625 chr2:218723285-218723286(-) m6A exon//intron       24284625 chr2:218749777-218749778(-) m6A 5'UTR//CDS//exon       22575960 chr2:218750473-218750474(-) m6A 5'UTR//CDS//exon       27773535 chr2:218750490-218750491(-) m6A 5'UTR//CDS//exon       27773535 chr2:218855733-218855734(-) m6A CDS//exon       24284625 chr2:218855754-218855755(-) m6A CDS       24284625 chr2:218867605-218867606(-) m6A 5'UTR       24284625 chr2:218867656-218867657(-) m6A 5'UTR       24284625 chr2:218867688-218867689(-) m6A 5'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TNS1	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: TNS1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg