Basic Information:

  VIRBase ID:  

VHID00384250

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          SMAD2:  NM_001135937     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	SMAD2
miRBase Accession/Entrez ID	MIMAT0003719	4087
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hMAD-2//hSMAD2//JV18//JV18-1//MADH2//MADR2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMAD2	chr18:45411706(-) A-I      intronic chr18:45408847(-) A-I      intronic chr18:45408841(-) A-I      intronic chr18:45363668(-) A-I      3'UTR chr18:45411757(-) A-I      intronic chr18:45411752(-) A-I      intronic chr18:45451008(-) A-I      intronic chr18:45363704(-) A-I      3'UTR chr18:45450997(-) A-I      intronic chr18:45439387(-) A-I      intronic chr18:45437525(-) A-I      intronic chr18:45363690(-) A-I      3'UTR chr18:45363689(-) A-I      3'UTR chr18:45363677(-) A-I      3'UTR chr18:45379889(-) A-I      intronic chr18:45411740(-) A-I      intronic chr18:45408840(-) A-I      intronic chr18:45411734(-) A-I      intronic chr18:45411732(-) A-I      intronic chr18:45411717(-) A-I      intronic chr18:45411709(-) A-I      intronic chr18:45363671(-) A-I      3'UTR chr18:45451101(-) A-I      intronic chr18:45439480(-) A-I      intronic chr18:45439485(-) A-I      intronic chr18:45439486(-) A-I      intronic chr18:45439564(-) A-I      intronic chr18:45450390(-) A-I      intronic chr18:45450415(-) A-I      intronic chr18:45450450(-) A-I      intronic chr18:45450454(-) A-I      intronic chr18:45450456(-) A-I      intronic chr18:45450457(-) A-I      intronic chr18:45450519(-) A-I      intronic chr18:45386945(-) A-I      intronic chr18:45450495(-) A-I      intronic chr18:45387470(-) A-I      intronic chr18:45387553(-) A-I      intronic chr18:45387583(-) A-I      intronic chr18:45387605(-) A-I      intronic chr18:45387664(-) A-I      intronic chr18:45387691(-) A-I      intronic chr18:45399317(-) A-I      intronic chr18:45404949(-) A-I      intronic chr18:45404959(-) A-I      intronic chr18:45418735(-) A-I      intronic chr18:45386445(-) A-I      intronic chr18:45386450(-) A-I      intronic chr18:45408795(-) A-I      intronic chr18:45386382(-) A-I      intronic chr18:45386378(-) A-I      intronic chr18:45386315(-) A-I      intronic chr18:45408682(-) A-I      intronic chr18:45408763(-) A-I      intronic chr18:45408764(-) A-I      intronic chr18:45408819(-) A-I      intronic chr18:45411604(-) A-I      intronic chr18:45411639(-) A-I      intronic chr18:45411703(-) A-I      intronic chr18:45411771(-) A-I      intronic chr18:45412098(-) A-I      intronic chr18:45412128(-) A-I      intronic chr18:45412129(-) A-I      intronic chr18:45412135(-) A-I      intronic chr18:45386926(-) A-I      intronic chr18:45412141(-) A-I      intronic chr18:45412150(-) A-I      intronic chr18:45417593(-) A-I      intronic chr18:45386759(-) A-I      intronic chr18:45386867(-) A-I      intronic chr18:45386479(-) A-I      intronic chr18:45386496(-) A-I      intronic chr18:45386758(-) A-I      intronic chr18:45386384(-) A-I      intronic chr18:45451107(-) A-I      intronic chr18:45405342(-) A-I      intronic chr18:45450536(-) A-I      intronic chr18:45417594(-) A-I      intronic chr18:45439363(-) A-I      intronic chr18:45439428(-) A-I      intronic chr18:45450363(-) A-I      intronic chr18:45408463(-) A-I      intronic chr18:45417671(-) A-I      intronic chr18:45411733(-) A-I      intronic chr18:45411614(-) A-I      intronic chr18:45386940(-) A-I      intronic chr18:45411811(-) A-I      intronic chr18:45386873(-) A-I      intronic chr18:45412115(-) A-I      intronic chr18:45434140(-) A-I      intronic chr18:45450956(-) A-I      intronic chr18:45450971(-) A-I      intronic chr18:45386421(-) A-I      intronic chr18:45386735(-) A-I      intronic chr18:45386499(-) A-I      intronic chr18:45386431(-) A-I      intronic chr18:45386803(-) A-I      intronic chr18:45417431(-) A-I      intronic chr18:45411653(-) A-I      intronic chr18:45386913(-) A-I      intronic chr18:45450437(-) A-I      intronic chr18:45404918(-) A-I      intronic chr18:45450451(-) A-I      intronic chr18:45386491(-) A-I      intronic chr18:45404820(-) A-I      intronic chr18:45382090(-) A-I      intronic chr18:45451011(-) A-I      intronic chr18:45382004(-) A-I      intronic chr18:45418744(-) A-I      intronic chr18:45405391(-) A-I      intronic chr18:45386745(-) A-I      intronic chr18:45412271(-) A-I      intronic chr18:45450376(-) A-I      intronic chr18:45386438(-) A-I      intronic chr18:45450929(-) A-I      intronic chr18:45418770(-) A-I      intronic chr18:45386807(-) A-I      intronic chr18:45450890(-) A-I      intronic chr18:45418663(-) A-I      intronic chr18:45450905(-) A-I      intronic chr18:45417419(-) A-I      intronic chr18:45412184(-) A-I      intronic chr18:45418739(-) A-I      intronic chr18:45411776(-) A-I      intronic chr18:45450503(-) A-I      intronic chr18:45386905(-) A-I      intronic chr18:45386406(-) A-I      intronic chr18:45386927(-) A-I      intronic chr18:45418817(-) A-I      intronic chr18:45451060(-) A-I      intronic chr18:45408472(-) A-I      intronic chr18:45412270(-) A-I      intronic chr18:45386866(-) A-I      intronic chr18:45386862(-) A-I      intronic chr18:45450533(-) A-I      intronic chr18:45451000(-) A-I      intronic chr18:45417564(-) A-I      intronic chr18:45434151(-) A-I      intronic chr18:45408508(-) A-I      intronic chr18:45450375(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SMAD2	chr18:45386491(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SMAD2	chr18:45335476-45335477(-) m6A 3'UTR       - chr18:45335507-45335508(-) m6A 3'UTR       - chr18:45335581-45335582(-) m6A 3'UTR       - chr18:45335617-45335618(-) m6A 3'UTR       - chr18:45335626-45335627(-) m6A 3'UTR       - chr18:45335655-45335656(-) m6A 3'UTR       - chr18:45335703-45335704(-) m6A 3'UTR       - chr18:45367936-45367937(-) m6A 3'UTR       24981863//27773535 chr18:45367963-45367964(-) m6A 3'UTR       24981863//27773535//22608085 chr18:45368087-45368088(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr18:45368119-45368120(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr18:45368168-45368169(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr18:45368252-45368253(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:45368269-45368270(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:45368284-45368285(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:45379653-45379654(-) m6A intron       27773535//22608085 chr18:45379658-45379659(-) m6A intron       27773535//22608085 chr18:45379683-45379684(-) m6A intron       27773535//22608085 chr18:45394740-45394741(-) m6A CDS//exon       24284625 chr18:45394781-45394782(-) m6A CDS//exon       24284625 chr18:45395619-45395620(-) m6A CDS//exon       24284625 chr18:45396893-45396894(-) Tm CDS//exon//intron       - chr18:45396913-45396914(-) m6A CDS//exon//intron       27773535 chr18:45421644-45421645(-) m6A exon//intron       27773535 chr18:45422921-45422922(-) m6A CDS       25456834//24981863//27773535//27371828//22608085 chr18:45422964-45422965(-) m6A CDS       25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr18:45422976-45422977(-) m1A CDS       26863196 chr18:45423058-45423059(-) Tm CDS       - chr18:45423069-45423070(-) m1A CDS       26863196 chr18:45423085-45423086(-) m6A CDS       25456834//24981863//28052920//27773535//27371828//27773536//22575960 chr18:45423128-45423129(-) m6A 5'UTR       25456834//24981863//27773535//27371828//27773536//22575960 chr18:45446444-45446445(-) m6A 5'UTR//intron       27773535//22575960 chr18:45446460-45446461(-) m6A 5'UTR//intron       27773535//22575960 chr18:45456749-45456750(-) m6A 5'UTR//intron       24981863//27773536 chr18:45456773-45456774(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr18:45456787-45456788(-) m6A 5'UTR//intron       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SMAD2	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: SMAD2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg