Basic Information:

  VIRBase ID:  

VHID00384027

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          GFRA1:  NM_001382561     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	GFRA1
miRBase Accession/Entrez ID	MIMAT0003719	2674
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GDNFR//GDNFRA//GFR-ALPHA-1//GFRalpha-1//RET1L//RETL1//TRNR1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GFRA1	chr10:117842022(-) A-I      intronic chr10:117984884(-) A-I      intronic chr10:117904654(-) A-I      intronic chr10:117985279(-) A-I      intronic chr10:117828126(-) A-I      intronic chr10:117827298(-) A-I      intronic chr10:117827300(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GFRA1	chr10:117822827-117822828(-) m6A 3'UTR       24981863//27371828 chr10:117822832-117822833(-) m6A 3'UTR       24981863//27371828 chr10:117822846-117822847(-) m6A 3'UTR       24981863//27371828 chr10:117822898-117822899(-) m6A 3'UTR       24981863 chr10:117822927-117822928(-) m6A 3'UTR       24981863 chr10:118031560-118031561(-) m6A 5'UTR//exon       27773536 chr10:118031598-118031599(-) m6A 5'UTR//exon       27773536 chr10:118031662-118031663(-) m6A 5'UTR//exon       24981863//27773536 chr10:118031696-118031697(-) m6A 5'UTR//exon       24981863//27773536 chr10:118031755-118031756(-) m6A 5'UTR//exon       24981863//27773536 chr10:118031770-118031771(-) m6A 5'UTR//exon       24981863//27773536 chr10:118031776-118031777(-) m6A 5'UTR//exon       24981863//27773536 chr10:118032111-118032112(-) m6A exon//intron       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GFRA1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: GFRA1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg