Basic Information:

  VIRBase ID:  

VHID00383644

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          ACADSB:  NM_001330174     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	ACADSB
miRBase Accession/Entrez ID	MIMAT0003719	36
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	2-MEBCAD//ACAD7//SBCAD

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ACADSB	chr10:124790000(+) A-I      intronic chr10:124791551(+) A-I      intronic chr10:124790031(+) A-I      intronic chr10:124778348(+) A-I      intronic chr10:124778392(+) A-I      intronic chr10:124786924(+) A-I      intronic chr10:124786927(+) A-I      intronic chr10:124786960(+) A-I      intronic chr10:124789945(+) A-I      intronic chr10:124789949(+) A-I      intronic chr10:124786972(+) A-I      intronic chr10:124786978(+) A-I      intronic chr10:124789955(+) A-I      intronic chr10:124789981(+) A-I      intronic chr10:124786939(+) A-I      intronic chr10:124789984(+) A-I      intronic chr10:124791595(+) A-I      intronic chr10:124789963(+) A-I      intronic chr10:124789811(+) A-I      intronic chr10:124771293(+) A-I      intronic chr10:124789923(+) A-I      intronic chr10:124789932(+) A-I      intronic chr10:124771173(+) A-I      intronic chr10:124791697(+) A-I      intronic chr10:124777017(+) A-I      intronic chr10:124791756(+) A-I      intronic chr10:124787912(+) A-I      intronic chr10:124788850(+) A-I      intronic chr10:124789989(+) A-I      intronic chr10:124791661(+) A-I      intronic chr10:124788783(+) A-I      intronic chr10:124789939(+) A-I      intronic chr10:124771182(+) A-I      intronic chr10:124792235(+) A-I      intronic chr10:124771312(+) A-I      intronic chr10:124789786(+) A-I      intronic chr10:124771511(+) A-I      intronic chr10:124771505(+) A-I      intronic chr10:124771392(+) A-I      intronic chr10:124789892(+) A-I      intronic chr10:124792242(+) A-I      intronic chr10:124771310(+) A-I      intronic chr10:124789880(+) A-I      intronic chr10:124788376(+) A-I      intronic chr10:124791677(+) A-I      intronic chr10:124773876(+) A-I      intronic chr10:124791680(+) A-I      intronic chr10:124788100(+) A-I      intronic chr10:124771223(+) A-I      intronic chr10:124789787(+) A-I      intronic chr10:124789950(+) A-I      intronic chr10:124788698(+) A-I      intronic chr10:124804888(+) A-I      intronic chr10:124792379(+) A-I      intronic chr10:124788068(+) A-I      intronic chr10:124791635(+) A-I      intronic chr10:124771550(+) A-I      intronic chr10:124789896(+) A-I      intronic chr10:124771311(+) A-I      intronic chr10:124784791(+) A-I      intronic chr10:124788777(+) A-I      intronic chr10:124771280(+) A-I      intronic chr10:124791596(+) A-I      intronic chr10:124788781(+) A-I      intronic chr10:124788701(+) A-I      intronic chr10:124789881(+) A-I      intronic chr10:124791719(+) A-I      intronic chr10:124771557(+) A-I      intronic chr10:124789877(+) A-I      intronic chr10:124791514(+) A-I      intronic chr10:124771074(+) A-I      intronic chr10:124788736(+) A-I      intronic chr10:124788846(+) A-I      intronic chr10:124789971(+) A-I      intronic chr10:124788072(+) A-I      intronic chr10:124788025(+) A-I      intronic chr10:124789922(+) A-I      intronic chr10:124813740(+) A-I      3'UTR chr10:124778182(+) A-I      intronic chr10:124778148(+) A-I      intronic chr10:124813591(+) A-I      3'UTR chr10:124778191(+) A-I      intronic chr10:124813672(+) A-I      3'UTR chr10:124788128(+) A-I      intronic chr10:124791527(+) A-I      intronic chr10:124786865(+) A-I      intronic chr10:124778260(+) A-I      intronic chr10:124813745(+) A-I      3'UTR chr10:124813682(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ACADSB	chr10:124778182(+) A-G intron -    22484847 chr10:124788698(+) A-G intron -    22484847 chr10:124788701(+) A-G intron -    22484847 chr10:124788850(+) A-G intron -    22484847 chr10:124791596(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ACADSB	chr10:124768509-124768510(+) m6A 5'UTR       24981863 chr10:124814681-124814682(+) m6A 3'UTR       24981863//22608085 chr10:124814692-124814693(+) m6A 3'UTR       24981863//22608085 chr10:124814719-124814720(+) m6A 3'UTR       24981863//22608085 chr10:124814826-124814827(+) m6A 3'UTR       24284625//24981863//22608085 chr10:124814837-124814838(+) m6A 3'UTR       24284625//24981863//22608085 chr10:124814856-124814857(+) m6A 3'UTR       24284625//24981863//22608085 chr10:124814886-124814887(+) m6A 3'UTR       24981863//22608085 chr10:124814979-124814980(+) m6A 3'UTR       24981863//22608085 chr10:124814989-124814990(+) m6A 3'UTR       24981863 chr10:124815042-124815043(+) m6A 3'UTR       24981863 chr10:124815129-124815130(+) m6A 3'UTR       24981863 chr10:124815561-124815562(+) m6A 3'UTR       24981863 chr10:124815600-124815601(+) m6A 3'UTR       24981863 chr10:124815634-124815635(+) m6A 3'UTR       24981863 chr10:124815728-124815729(+) m6A 3'UTR       24981863//22608085 chr10:124815767-124815768(+) m6A 3'UTR       24981863//22608085 chr10:124815874-124815875(+) m6A 3'UTR       24209618//24981863//27773535//22608085 chr10:124815885-124815886(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr10:124815904-124815905(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr10:124815934-124815935(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr10:124816027-124816028(+) m6A 3'UTR       24981863//22608085 chr10:124816037-124816038(+) m6A 3'UTR       24981863//22608085 chr10:124816092-124816093(+) m6A 3'UTR       24981863//22608085 chr10:124816131-124816132(+) m6A 3'UTR       24981863//22608085 chr10:124816172-124816173(+) m6A 3'UTR       24981863//22608085 chr10:124816245-124816246(+) m6A 3'UTR       24981863//22608085 chr10:124816287-124816288(+) m6A 3'UTR       24981863//22608085 chr10:124816340-124816341(+) m6A 3'UTR       24981863//22608085 chr10:124816429-124816430(+) m6A 3'UTR       24981863//22608085 chr10:124816435-124816436(+) m6A 3'UTR       24981863//22608085 chr10:124816445-124816446(+) m6A 3'UTR       24981863//22608085 chr10:124816501-124816502(+) m6A 3'UTR       24981863//22608085 chr10:124816524-124816525(+) m6A 3'UTR       24981863//22608085 chr10:124816532-124816533(+) m6A 3'UTR       24981863//22608085 chr10:124816585-124816586(+) m6A 3'UTR       24284625//24981863//22608085 chr10:124816621-124816622(+) m6A 3'UTR       24284625//24981863//22608085 chr10:124816691-124816692(+) m6A 3'UTR       24981863//22608085 chr10:124816710-124816711(+) m6A 3'UTR       24981863//22608085 chr10:124816759-124816760(+) m6A 3'UTR       22608085 chr10:124816996-124816997(+) m6A 3'UTR       24981863 chr10:124817028-124817029(+) m6A 3'UTR       24981863 chr10:124817074-124817075(+) m6A 3'UTR       24981863 chr10:124817106-124817107(+) m6A 3'UTR       24981863//22608085 chr10:124817757-124817758(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ACADSB	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: ACADSB

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg