Basic Information:

  VIRBase ID:  

VHID00383298

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:  MIMAT0003718          GLDN:  NM_001330297     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-3p	GLDN
miRBase Accession/Entrez ID	MIMAT0003718	342035
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLOM//COLM//CRG-L2//CRGL2//LCCS11//UNC-112//UNC-122

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GLDN	chr15:51681873(+) A-I      intronic chr15:51667020(+) A-I      intronic chr15:51681878(+) A-I      intronic chr15:51639191(+) A-I      intronic chr15:51642076(+) A-I      intronic chr15:51667036(+) A-I      intronic chr15:51662248(+) A-I      intronic chr15:51663979(+) A-I      intronic chr15:51667064(+) A-I      intronic chr15:51640554(+) A-I      intronic chr15:51667052(+) A-I      intronic chr15:51667047(+) A-I      intronic chr15:51667060(+) A-I      intronic chr15:51662148(+) A-I      intronic chr15:51663984(+) A-I      intronic chr15:51663095(+) A-I      intronic chr15:51698749(+) A-I      3'UTR chr15:51697688(+) A-I      3'UTR chr15:51697684(+) A-I      3'UTR chr15:51698784(+) A-I      3'UTR chr15:51697670(+) A-I      3'UTR chr15:51697722(+) A-I      3'UTR chr15:51667165(+) A-I      intronic chr15:51662112(+) A-I      intronic chr15:51639008(+) A-I      intronic chr15:51682788(+) A-I      intronic chr15:51667123(+) A-I      intronic chr15:51662044(+) A-I      intronic chr15:51648404(+) A-I      intronic chr15:51640630(+) A-I      intronic chr15:51658846(+) A-I      intronic chr15:51647771(+) A-I      intronic chr15:51648372(+) A-I      intronic chr15:51682739(+) A-I      intronic chr15:51662934(+) A-I      intronic chr15:51648257(+) A-I      intronic chr15:51664024(+) A-I      intronic chr15:51681874(+) A-I      intronic chr15:51640599(+) A-I      intronic chr15:51681910(+) A-I      intronic chr15:51662122(+) A-I      intronic chr15:51642147(+) A-I      intronic chr15:51640631(+) A-I      intronic chr15:51681848(+) A-I      intronic chr15:51647782(+) A-I      intronic chr15:51698742(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GLDN	chr15:51676009-51676010(+) m6A CDS//exon       25456834 chr15:51676027-51676028(+) m6A CDS//exon       25456834 chr15:51676293-51676294(+) m6A 3'UTR//exon//intron       - chr15:51676316-51676317(+) m6A 3'UTR//exon//intron       - chr15:51676903-51676904(+) m6A 3'UTR//exon//intron       - chr15:51676917-51676918(+) m6A 3'UTR//exon//intron       - chr15:51677006-51677007(+) m6A 3'UTR//exon//intron       - chr15:51677053-51677054(+) m6A 3'UTR//exon//intron       - chr15:51677063-51677064(+) m6A 3'UTR//exon//intron       - chr15:51677104-51677105(+) m6A 3'UTR//exon//intron       - chr15:51696660-51696661(+) m6A CDS       22608085 chr15:51696751-51696752(+) m6A CDS       22608085 chr15:51696800-51696801(+) m6A CDS       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-3p	Exosome Primary dendritic cells|T cell line (J77)     21505438
	GLDN	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-3p
Interactor2: GLDN

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg