Basic Information:

  VIRBase ID:  

VHID00382074

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:  MIMAT0003718          PCGF5:  NR_046310     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-3p	PCGF5
miRBase Accession/Entrez ID	MIMAT0003718	84333
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RNF159

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCGF5	chr10:92995211(+) A-I      intronic chr10:92990704(+) A-I      intronic chr10:93035472(+) A-I      intronic chr10:92990589(+) A-I      intronic chr10:92995728(+) A-I      intronic chr10:93035471(+) A-I      intronic chr10:92995724(+) A-I      intronic chr10:92990418(+) A-I      intronic chr10:92995277(+) A-I      intronic chr10:92995737(+) A-I      intronic chr10:92985530(+) A-I      intronic chr10:92985531(+) A-I      intronic chr10:92985360(+) A-I      intronic chr10:92985402(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PCGF5	chr10:92973804(+) A-G intron -    22484847 chr10:92974001(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCGF5	chr10:92980494-92980495(+) m6A exon//intron       24209618//24981863 chr10:92982460-92982461(+) m6A 5'UTR//exon       24284625//24209618//24981863 chr10:92982526-92982527(+) m6A 5'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr10:92982565-92982566(+) m6A 5'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr10:92982582-92982583(+) m6A 5'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr10:92982598-92982599(+) m6A 5'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr10:92982645-92982646(+) m6A CDS//exon       24284625//24209618//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-3p	Exosome Primary dendritic cells|T cell line (J77)     21505438
	PCGF5	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-3p
Interactor2: PCGF5

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg