Basic Information:

  VIRBase ID:  

VHID00381461

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:  MIMAT0003718          DDX55:  NR_135105     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-3p	DDX55
miRBase Accession/Entrez ID	MIMAT0003718	57696
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DDX55	chr12:124090866(+) A-I      intronic chr12:124088371(+) A-I      intronic chr12:124090856(+) A-I      intronic chr12:124088561(+) A-I      intronic chr12:124089830(+) A-I      intronic chr12:124089760(+) A-I      intronic chr12:124088714(+) A-I      intronic chr12:124101576(+) A-I      intronic chr12:124101603(+) A-I      intronic chr12:124088139(+) A-I      intronic chr12:124089832(+) A-I      intronic chr12:124101606(+) A-I      intronic chr12:124088467(+) A-I      intronic chr12:124088715(+) A-I      intronic chr12:124088889(+) A-I      intronic chr12:124089739(+) A-I      intronic chr12:124101521(+) A-I      intronic chr12:124089805(+) A-I      intronic chr12:124088835(+) A-I      intronic chr12:124088077(+) A-I      intronic chr12:124097258(+) A-I      intronic chr12:124101560(+) A-I      intronic chr12:124088211(+) A-I      intronic chr12:124088475(+) A-I      intronic chr12:124088816(+) A-I      intronic chr12:124089792(+) A-I      intronic chr12:124104916(+) A-I      3'UTR chr12:124104908(+) A-I      3'UTR chr12:124088454(+) A-I      intronic chr12:124088698(+) A-I      intronic chr12:124090812(+) A-I      intronic chr12:124088039(+) A-I      intronic chr12:124090798(+) A-I      intronic chr12:124088840(+) A-I      intronic chr12:124089741(+) A-I      intronic chr12:124089742(+) A-I      intronic chr12:124089667(+) A-I      intronic chr12:124088369(+) A-I      intronic chr12:124089743(+) A-I      intronic chr12:124088406(+) A-I      intronic chr12:124088772(+) A-I      intronic chr12:124088489(+) A-I      intronic chr12:124088826(+) A-I      intronic chr12:124088834(+) A-I      intronic chr12:124089831(+) A-I      intronic chr12:124090789(+) A-I      intronic chr12:124088449(+) A-I      intronic chr12:124088856(+) A-I      intronic chr12:124097289(+) A-I      intronic chr12:124088476(+) A-I      intronic chr12:124088739(+) A-I      intronic chr12:124088450(+) A-I      intronic chr12:124088621(+) A-I      intronic chr12:124088680(+) A-I      intronic chr12:124088857(+) A-I      intronic chr12:124088853(+) A-I      intronic chr12:124088126(+) A-I      intronic chr12:124089606(+) A-I      intronic chr12:124088721(+) A-I      intronic chr12:124088559(+) A-I      intronic chr12:124088609(+) A-I      intronic chr12:124088753(+) A-I      intronic chr12:124089685(+) A-I      intronic chr12:124097327(+) A-I      intronic chr12:124088608(+) A-I      intronic chr12:124088550(+) A-I      intronic chr12:124089754(+) A-I      intronic chr12:124090843(+) A-I      intronic chr12:124088908(+) A-I      intronic chr12:124088904(+) A-I      intronic chr12:124101469(+) A-I      intronic chr12:124088072(+) A-I      intronic chr12:124101496(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DDX55	chr12:124088450(+) A-I intron -    22327324 chr12:124088698(+) A-I intron -    22327324 chr12:124088467(+) A-I intron -    21960545 chr12:124088772(+) A-I intron -    21960545 chr12:124090798(+) A-I intron -    21960545 chr12:124088072(+) A-G intron -    22484847 chr12:124088077(+) A-G intron -    22484847 chr12:124088211(+) A-G intron -    22484847 chr12:124088369(+) A-G intron -    22484847 chr12:124088450(+) A-G intron -    22484847 chr12:124088467(+) A-G intron -    22484847 chr12:124088476(+) A-G intron -    22484847 chr12:124088698(+) A-G intron -    22484847 chr12:124088739(+) A-G intron -    22484847 chr12:124088834(+) A-G intron -    22484847 chr12:124088835(+) A-G intron -    22484847 chr12:124088908(+) A-G intron -    22484847 chr12:124089743(+) A-G intron -    22484847 chr12:124089832(+) A-G intron -    22484847 chr12:124090798(+) A-G intron -    22484847 chr12:124088396(+) T-C intron -    22484847 chr12:124088550(+) A-G intron -    22484847 chr12:124088609(+) A-G intron -    22484847 chr12:124088621(+) A-G intron -    22484847 chr12:124088715(+) A-G intron -    22484847 chr12:124088721(+) A-G intron -    22484847 chr12:124088816(+) A-G intron -    22484847 chr12:124088856(+) A-G intron -    22484847 chr12:124088857(+) A-G intron -    22484847 chr12:124088889(+) A-G intron -    22484847 chr12:124089685(+) A-G intron -    22484847 chr12:124089792(+) A-G intron -    22484847 chr12:124090812(+) A-G intron -    22484847 chr12:124091231(+) A-G intron -    22484847 chr12:124091358(+) A-G intron -    22484847 chr12:124091384(+) A-G intron -    22484847 chr12:124091385(+) A-G intron -    22484847 chr12:124103839(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DDX55	chr12:124090183-124090184(+) m6A exon//intron       - chr12:124090191-124090192(+) m6A exon//intron       - chr12:124090598-124090599(+) m6A exon//intron       - chr12:124090604-124090605(+) m6A exon//intron       - chr12:124090637-124090638(+) m6A 3'UTR//CDS//exon//intron       - chr12:124097781-124097782(+) m6A 3'UTR//CDS//exon       27773535 chr12:124104135-124104136(+) m6A CDS//exon       24981863//27773535//22608085 chr12:124104163-124104164(+) m6A CDS//exon       24981863//27773535//22608085 chr12:124104532-124104533(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104542-124104543(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104560-124104561(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104572-124104573(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104636-124104637(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104645-124104646(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104705-124104706(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104715-124104716(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104782-124104783(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:124104870-124104871(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:124104966-124104967(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124104978-124104979(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124104988-124104989(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124105003-124105004(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124105011-124105012(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124105016-124105017(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr12:124105406-124105407(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-3p	Exosome Primary dendritic cells|T cell line (J77)     21505438
	DDX55	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-3p
Interactor2: DDX55

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg