Detail Information

Basic Information:


  VIRBase ID:  

VHID00380358

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:           TRPC4AP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-3p TRPC4AP
miRBase
Accession/Entrez ID		 MIMAT0003718 26133
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C20orf188//PPP1R158//TRRP4AP//TRUSS

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRPC4AP
chr20:33601166(-) A-I      intronic
chr20:33614162(-) A-I      intronic
chr20:33612605(-) A-I      intronic
chr20:33612584(-) A-I      intronic
chr20:33612579(-) A-I      intronic
chr20:33612569(-) A-I      intronic
chr20:33601216(-) A-I      intronic
chr20:33601165(-) A-I      intronic
chr20:33621578(-) A-I      intronic
chr20:33654166(-) A-I      intronic
chr20:33654159(-) A-I      intronic
chr20:33620372(-) A-I      intronic
chr20:33620046(-) A-I      intronic
chr20:33621612(-) A-I      intronic
chr20:33614141(-) A-I      intronic
chr20:33612581(-) A-I      intronic
chr20:33620022(-) A-I      intronic
chr20:33620004(-) A-I      intronic
chr20:33619930(-) A-I      intronic
chr20:33619881(-) A-I      intronic
chr20:33619866(-) A-I      intronic
chr20:33619311(-) A-I      intronic
chr20:33616992(-) A-I      intronic
chr20:33614121(-) A-I      intronic
chr20:33614291(-) A-I      intronic
chr20:33614292(-) A-I      intronic
chr20:33610598(-) A-I      intronic
chr20:33616174(-) A-I      intronic
chr20:33616883(-) A-I      intronic
chr20:33616917(-) A-I      intronic
chr20:33617468(-) A-I      intronic
chr20:33617510(-) A-I      intronic
chr20:33617515(-) A-I      intronic
chr20:33617531(-) A-I      intronic
chr20:33617544(-) A-I      intronic
chr20:33617547(-) A-I      intronic
chr20:33617550(-) A-I      intronic
chr20:33617577(-) A-I      intronic
chr20:33617603(-) A-I      intronic
chr20:33617623(-) A-I      intronic
chr20:33613122(-) A-I      intronic
chr20:33612600(-) A-I      intronic
chr20:33612549(-) A-I      intronic
chr20:33612537(-) A-I      intronic
chr20:33612455(-) A-I      intronic
chr20:33612435(-) A-I      intronic
chr20:33610677(-) A-I      intronic
chr20:33610606(-) A-I      intronic
chr20:33677472(-) A-I      intronic
chr20:33674943(-) A-I      intronic
chr20:33610603(-) A-I      intronic
chr20:33674889(-) A-I      intronic
chr20:33674876(-) A-I      intronic
chr20:33674724(-) A-I      intronic
chr20:33674656(-) A-I      intronic
chr20:33601265(-) A-I      intronic
chr20:33601281(-) A-I      intronic
chr20:33601298(-) A-I      intronic
chr20:33601299(-) A-I      intronic
chr20:33624520(-) A-I      intronic
chr20:33624627(-) A-I      intronic
chr20:33624662(-) A-I      intronic
chr20:33624666(-) A-I      intronic
chr20:33624667(-) A-I      intronic
chr20:33624686(-) A-I      intronic
chr20:33625038(-) A-I      intronic
chr20:33625050(-) A-I      intronic
chr20:33626829(-) A-I      intronic
chr20:33631122(-) A-I      intronic
chr20:33631135(-) A-I      intronic
chr20:33631178(-) A-I      intronic
chr20:33631238(-) A-I      intronic
chr20:33631322(-) A-I      intronic
chr20:33638261(-) A-I      intronic
chr20:33638394(-) A-I      intronic
chr20:33638454(-) A-I      intronic
chr20:33638459(-) A-I      intronic
chr20:33638472(-) A-I      intronic
chr20:33638676(-) A-I      intronic
chr20:33638705(-) A-I      intronic
chr20:33639243(-) A-I      intronic
chr20:33640586(-) A-I      intronic
chr20:33646590(-) A-I      intronic
chr20:33647228(-) A-I      intronic
chr20:33647299(-) A-I      intronic
chr20:33647447(-) A-I      intronic
chr20:33651552(-) A-I      intronic
chr20:33651656(-) A-I      intronic
chr20:33656433(-) A-I      intronic
chr20:33656449(-) A-I      intronic
chr20:33657501(-) A-I      intronic
chr20:33624637(-) A-I      intronic
chr20:33669719(-) A-I      intronic
chr20:33673212(-) A-I      intronic
chr20:33673242(-) A-I      intronic
chr20:33676939(-) A-I      intronic
chr20:33619894(-) A-I      intronic
chr20:33619992(-) A-I      intronic
chr20:33619997(-) A-I      intronic
chr20:33620100(-) A-I      intronic
chr20:33620347(-) A-I      intronic
chr20:33620445(-) A-I      intronic
chr20:33674043(-) A-I      intronic
chr20:33620453(-) A-I      intronic
chr20:33610178(-) A-I      intronic
chr20:33674035(-) A-I      intronic
chr20:33674034(-) A-I      intronic
chr20:33673974(-) A-I      intronic
chr20:33677841(-) A-I      intronic
chr20:33620548(-) A-I      intronic
chr20:33620794(-) A-I      intronic
chr20:33620959(-) A-I      intronic
chr20:33621552(-) A-I      intronic
chr20:33673243(-) A-I      intronic
chr20:33673321(-) A-I      intronic
chr20:33673819(-) A-I      intronic
chr20:33673931(-) A-I      intronic
chr20:33619886(-) A-I      intronic
chr20:33619849(-) A-I      intronic
chr20:33619839(-) A-I      intronic
chr20:33619831(-) A-I      intronic
chr20:33619771(-) A-I      intronic
chr20:33619318(-) A-I      intronic
chr20:33619257(-) A-I      intronic
chr20:33619252(-) A-I      intronic
chr20:33619172(-) A-I      intronic
chr20:33617944(-) A-I      intronic
chr20:33617922(-) A-I      intronic
chr20:33617888(-) A-I      intronic
chr20:33610177(-) A-I      intronic
chr20:33617882(-) A-I      intronic
chr20:33617877(-) A-I      intronic
chr20:33617819(-) A-I      intronic
chr20:33612424(-) A-I      intronic
chr20:33610153(-) A-I      intronic
chr20:33610132(-) A-I      intronic
chr20:33610055(-) A-I      intronic
chr20:33610051(-) A-I      intronic
chr20:33602983(-) A-I      intronic
chr20:33602918(-) A-I      intronic
chr20:33614091(-) A-I      intronic
chr20:33613148(-) A-I      intronic
chr20:33613124(-) A-I      intronic
chr20:33610743(-) A-I      intronic
chr20:33673152(-) A-I      intronic
chr20:33654060(-) A-I      intronic
chr20:33616971(-) A-I      intronic
chr20:33678381(-) A-I      intronic
chr20:33612434(-) A-I      intronic
chr20:33616888(-) A-I      intronic
chr20:33631232(-) A-I      intronic
chr20:33613248(-) A-I      intronic
chr20:33610579(-) A-I      intronic
chr20:33631142(-) A-I      intronic
chr20:33617038(-) A-I      intronic
chr20:33620806(-) A-I      intronic
chr20:33602986(-) A-I      intronic
chr20:33624575(-) A-I      intronic
chr20:33610651(-) A-I      intronic
chr20:33620755(-) A-I      intronic
chr20:33638433(-) A-I      intronic
chr20:33657649(-) A-I      intronic
chr20:33610041(-) A-I      intronic
chr20:33617634(-) A-I      intronic
chr20:33613113(-) A-I      intronic
chr20:33657523(-) A-I      intronic
chr20:33651612(-) A-I      intronic
chr20:33621592(-) A-I      intronic
chr20:33619857(-) A-I      intronic
chr20:33638803(-) A-I      intronic
chr20:33610232(-) A-I      intronic
chr20:33620852(-) A-I      intronic
chr20:33620953(-) A-I      intronic
chr20:33678252(-) A-I      intronic
chr20:33620820(-) A-I      intronic
chr20:33617617(-) A-I      intronic
chr20:33601259(-) A-I      intronic
chr20:33638700(-) A-I      intronic
chr20:33677409(-) A-I      intronic
chr20:33677154(-) A-I      intronic
chr20:33601210(-) A-I      intronic
chr20:33620374(-) A-I      intronic
chr20:33616168(-) A-I      intronic
chr20:33639208(-) A-I      intronic
chr20:33619920(-) A-I      intronic
chr20:33673897(-) A-I      intronic
chr20:33612593(-) A-I      intronic
chr20:33620911(-) A-I      intronic
chr20:33614310(-) A-I      intronic
chr20:33632037(-) A-I      intronic
chr20:33631110(-) A-I      intronic
chr20:33613208(-) A-I      intronic
chr20:33640041(-) A-I      intronic
chr20:33620878(-) A-I      intronic
chr20:33620047(-) A-I      intronic
chr20:33616084(-) A-I      intronic
chr20:33647339(-) A-I      intronic
chr20:33619966(-) A-I      intronic
chr20:33601124(-) A-I      intronic
chr20:33646652(-) A-I      intronic
chr20:33620934(-) A-I      intronic
chr20:33617046(-) A-I      intronic
chr20:33638432(-) A-I      intronic
chr20:33616954(-) A-I      intronic
chr20:33639271(-) A-I      intronic
chr20:33678404(-) A-I      intronic
chr20:33610658(-) A-I      intronic
chr20:33646765(-) A-I      intronic
chr20:33610580(-) A-I      intronic
chr20:33678353(-) A-I      intronic
chr20:33613249(-) A-I      intronic
chr20:33620914(-) A-I      intronic
chr20:33610731(-) A-I      intronic
chr20:33616991(-) A-I      intronic
chr20:33617668(-) A-I      intronic
chr20:33617957(-) A-I      intronic
chr20:33620860(-) A-I      intronic
chr20:33620888(-) A-I      intronic
chr20:33616885(-) A-I      intronic
chr20:33602908(-) A-I      intronic
chr20:33619789(-) A-I      intronic
chr20:33616967(-) A-I      intronic
chr20:33620940(-) A-I      intronic
chr20:33654130(-) A-I      intronic
chr20:33620828(-) A-I      intronic
chr20:33612370(-) A-I      intronic
chr20:33610621(-) A-I      intronic
chr20:33610021(-) A-I      intronic
chr20:33612352(-) A-I      intronic
chr20:33620123(-) A-I      intronic
chr20:33619821(-) A-I      intronic
chr20:33640409(-) A-I      intronic
chr20:33612382(-) A-I      intronic
chr20:33674633(-) A-I      intronic
chr20:33603564(-) A-I      intronic
chr20:33619972(-) A-I      intronic
chr20:33677307(-) A-I      intronic
chr20:33613243(-) A-I      intronic
chr20:33638717(-) A-I      intronic
chr20:33614261(-) A-I      intronic
chr20:33619825(-) A-I      intronic
chr20:33673934(-) A-I      intronic
chr20:33620780(-) A-I      intronic
chr20:33617620(-) A-I      intronic
chr20:33619164(-) A-I      intronic
chr20:33616810(-) A-I      intronic
chr20:33616942(-) A-I      intronic
chr20:33617711(-) A-I      intronic
chr20:33617712(-) A-I      intronic
chr20:33632028(-) A-I      intronic
chr20:33620443(-) A-I      intronic
chr20:33677168(-) A-I      intronic
chr20:33677084(-) A-I      intronic
chr20:33619902(-) A-I      intronic
chr20:33612408(-) A-I      intronic
chr20:33619798(-) A-I      intronic
chr20:33616838(-) A-I      intronic
chr20:33620023(-) A-I      intronic
chr20:33602931(-) A-I      intronic
chr20:33620837(-) A-I      intronic
chr20:33638400(-) A-I      intronic
chr20:33610070(-) A-I      intronic
chr20:33657744(-) A-I      intronic
chr20:33614237(-) A-I      intronic
chr20:33610639(-) A-I      intronic
chr20:33614158(-) A-I      intronic
chr20:33620749(-) A-I      intronic
chr20:33624545(-) A-I      intronic
chr20:33610632(-) A-I      intronic
chr20:33617997(-) A-I      intronic
chr20:33678359(-) A-I      intronic
chr20:33619960(-) A-I      intronic
chr20:33610561(-) A-I      intronic
chr20:33617788(-) A-I      intronic
chr20:33624583(-) A-I      intronic
chr20:33617044(-) A-I      intronic
chr20:33631323(-) A-I      intronic
chr20:33619729(-) A-I      intronic
chr20:33617635(-) A-I      intronic
chr20:33640496(-) A-I      intronic
chr20:33677127(-) A-I      intronic
chr20:33610620(-) A-I      intronic
chr20:33640172(-) A-I      intronic
chr20:33616096(-) A-I      intronic
chr20:33610704(-) A-I      intronic
chr20:33617002(-) A-I      intronic
chr20:33619122(-) A-I      intronic
chr20:33638434(-) A-I      intronic
chr20:33602981(-) A-I      intronic
chr20:33638485(-) A-I      intronic
chr20:33619896(-) A-I      intronic
chr20:33617962(-) A-I      intronic
chr20:33620776(-) A-I      intronic
chr20:33614283(-) A-I      intronic
chr20:33620900(-) A-I      intronic
chr20:33620556(-) A-I      intronic
chr20:33620842(-) A-I      intronic
chr20:33616811(-) A-I      intronic
chr20:33620450(-) A-I      intronic
chr20:33613112(-) A-I      intronic
chr20:33619150(-) A-I      intronic
chr20:33640163(-) A-I      intronic
chr20:33616792(-) A-I      intronic
chr20:33621569(-) A-I      intronic
chr20:33614110(-) A-I      intronic
chr20:33657596(-) A-I      intronic
chr20:33601945(-) A-I      intronic
chr20:33620829(-) A-I      intronic
chr20:33677552(-) A-I      intronic
chr20:33617981(-) A-I      intronic
chr20:33610231(-) A-I      intronic
chr20:33612555(-) A-I      intronic
chr20:33644566(-) A-I      intronic
chr20:33638789(-) A-I      intronic
chr20:33677840(-) A-I      intronic
chr20:33601180(-) A-I      intronic
chr20:33616930(-) A-I      intronic
chr20:33654073(-) A-I      intronic
chr20:33653985(-) A-I      intronic
chr20:33620107(-) A-I      intronic
chr20:33631220(-) A-I      intronic
chr20:33612520(-) A-I      intronic
chr20:33619298(-) A-I      intronic
chr20:33619258(-) A-I      intronic
chr20:33616932(-) A-I      intronic
chr20:33620095(-) A-I      intronic
chr20:33617949(-) A-I      intronic
chr20:33620554(-) A-I      intronic
chr20:33676927(-) A-I      intronic
chr20:33620070(-) A-I      intronic
chr20:33610714(-) A-I      intronic
chr20:33646585(-) A-I      intronic
chr20:33651542(-) A-I      intronic
chr20:33620371(-) A-I      intronic
chr20:33620444(-) A-I      intronic
chr20:33620762(-) A-I      intronic
chr20:33639987(-) A-I      intronic
chr20:33610750(-) A-I      intronic
chr20:33610613(-) A-I      intronic
chr20:33674653(-) A-I      intronic
chr20:33616945(-) A-I      intronic
chr20:33619861(-) A-I      intronic
chr20:33620992(-) A-I      intronic
chr20:33601179(-) A-I      intronic
chr20:33616095(-) A-I      intronic
chr20:33601305(-) A-I      intronic
chr20:33646764(-) A-I      intronic
chr20:33651457(-) A-I      intronic
chr20:33638718(-) A-I      intronic
chr20:33647319(-) A-I      intronic
chr20:33624546(-) A-I      intronic
chr20:33603439(-) A-I      intronic
chr20:33640459(-) A-I      intronic
chr20:33658382(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRPC4AP
chr20:33619298(-) A-I intron -    21960545   //22327324
chr20:33620554(-) A-I intron -    22327324
chr20:33617038(-) A-I intron -    21960545
chr20:33651542(-) A-I intron -    21960545
chr20:33610021(-) A-G intron -    22484847
chr20:33612555(-) A-G intron -    22484847
chr20:33614110(-) A-G intron -    22484847
chr20:33614286(-) A-G intron -    22484847
chr20:33616013(-) G-A intron -    22484847
chr20:33616014(-) G-A intron -    22484847
chr20:33616810(-) A-G intron -    22484847
chr20:33616967(-) A-G intron -    22484847
chr20:33616971(-) A-G intron -    22484847
chr20:33616991(-) A-G intron -    22484847
chr20:33617668(-) A-G intron -    22484847
chr20:33617949(-) A-G intron -    22484847
chr20:33619038(-) A-T intron -    22484847
chr20:33619050(-) G-A intron -    22484847
chr20:33619122(-) A-G intron -    22484847
chr20:33619258(-) A-G intron -    22484847
chr20:33619298(-) A-G intron -    22484847
chr20:33619825(-) A-G intron -    22484847
chr20:33620414(-) A-G intron -    22484847
chr20:33620444(-) A-G intron -    22484847
chr20:33620554(-) A-G intron -    22484847
chr20:33620755(-) A-G intron -    22484847
chr20:33620761(-) A-G intron -    22484847
chr20:33620860(-) A-G intron -    22484847
chr20:33620878(-) A-G intron -    22484847
chr20:33620950(-) A-G intron -    22484847
chr20:33673934(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRPC4AP
chr20:33590539-33590540(-) m6A 3'UTR       24284625
chr20:33590671-33590672(-) m6A 3'UTR       25456834//24981863
chr20:33590705-33590706(-) m6A 3'UTR       25456834//24981863
chr20:33590735-33590736(-) m6A 3'UTR       25456834//24981863
chr20:33590964-33590965(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr20:33590970-33590971(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr20:33590976-33590977(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr20:33591027-33591028(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr20:33591033-33591034(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr20:33591052-33591053(-) m6A CDS       24284625//25456834//24981863//22575960//22608085
chr20:33591231-33591232(-) m6A CDS       24284625
chr20:33591237-33591238(-) m6A CDS       24284625
chr20:33611853-33611854(-) Gm intron       -
chr20:33665948-33665949(-) m6A CDS       -
chr20:33665967-33665968(-) m6A CDS       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-3p
Exosome Primary dendritic cells|T cell line (J77)     21505438
TRPC4AP
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-3p
Interactor2: TRPC4AP

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA
Support Database RepTar//VmiReg

Starting a new search, please wait ...