Detail Information

Basic Information:


  VIRBase ID:  

VHID00379596

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:           TOPORS:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-3p TOPORS
miRBase
Accession/Entrez ID		 MIMAT0003718 10210
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - LUN//P53BP3//RP31//TP53BPL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TOPORS
chr9:32548478(-) A-I      intronic
chr9:32548394(-) A-I      intronic
chr9:32548287(-) A-I      intronic
chr9:32548279(-) A-I      intronic
chr9:32549229(-) A-I      intronic
chr9:32547965(-) A-I      intronic
chr9:32548339(-) A-I      intronic
chr9:32547951(-) A-I      intronic
chr9:32548120(-) A-I      intronic
chr9:32548121(-) A-I      intronic
chr9:32547902(-) A-I      intronic
chr9:32547860(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TOPORS
chr9:32540729(-) T-G exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TOPORS
chr9:32540552-32540553(-) m6A 3'UTR       27773535
chr9:32540561-32540562(-) m6A 3'UTR       27773535
chr9:32540584-32540585(-) m6A 3'UTR       27773535
chr9:32540658-32540659(-) m6A 3'UTR       27773535
chr9:32540669-32540670(-) m6A 3'UTR       27773535
chr9:32540763-32540764(-) m6A 3'UTR       27773535
chr9:32540774-32540775(-) m6A 3'UTR       27773535
chr9:32540790-32540791(-) m6A 3'UTR       24981863//27773535
chr9:32540824-32540825(-) m6A 3'UTR       24981863//27773535
chr9:32540836-32540837(-) m6A 3'UTR       24981863//27773535
chr9:32541140-32541141(-) m6A 3'UTR       27773535
chr9:32541285-32541286(-) m6A 3'UTR       24981863//27773535//22608085
chr9:32541382-32541383(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32541400-32541401(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32541431-32541432(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32541464-32541465(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32541493-32541494(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:32541543-32541544(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:32541581-32541582(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:32541634-32541635(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr9:32541677-32541678(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr9:32541687-32541688(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr9:32541724-32541725(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr9:32541837-32541838(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr9:32541858-32541859(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr9:32541882-32541883(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr9:32541938-32541939(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr9:32541960-32541961(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:32541965-32541966(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:32541973-32541974(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:32541988-32541989(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:32542018-32542019(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32542057-32542058(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32542124-32542125(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32542172-32542173(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32542187-32542188(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:32542280-32542281(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr9:32542326-32542327(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32542352-32542353(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32542387-32542388(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32542393-32542394(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32542547-32542548(-) m6A CDS       24981863//27773535//22608085
chr9:32542580-32542581(-) m6A CDS       24981863//27773535//27371828//22608085
chr9:32542597-32542598(-) m6A CDS       24981863//27773535//27371828//22608085
chr9:32542614-32542615(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr9:32542752-32542753(-) m6A CDS       24981863//27773535//22608085
chr9:32542780-32542781(-) m6A CDS       24981863//27773535//22608085
chr9:32542798-32542799(-) m6A CDS       24981863//27773535//22608085
chr9:32542804-32542805(-) m6A CDS       24981863//27773535//22608085
chr9:32542893-32542894(-) m6A CDS       27773535//22608085
chr9:32542971-32542972(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32542979-32542980(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32542988-32542989(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543014-32543015(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543034-32543035(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543043-32543044(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543051-32543052(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543067-32543068(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr9:32543135-32543136(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32543178-32543179(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32543256-32543257(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32543264-32543265(-) m6A CDS       24284625//27773535//22608085
chr9:32543321-32543322(-) m6A CDS       24284625//27773535//22608085
chr9:32543480-32543481(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr9:32543499-32543500(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr9:32543613-32543614(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr9:32543741-32543742(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr9:32543766-32543767(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr9:32543826-32543827(-) m6A CDS       24284625//24981863//27773535//22608085
chr9:32543859-32543860(-) m6A CDS       24284625//24981863//22608085
chr9:32543915-32543916(-) m6A CDS       24284625//24981863//22608085
chr9:32543923-32543924(-) m6A CDS       24284625//24981863//22608085
chr9:32544096-32544097(-) m6A CDS       22608085
chr9:32544121-32544122(-) m6A CDS       22608085
chr9:32544248-32544249(-) m6A CDS       24981863//27371828//22608085
chr9:32544289-32544290(-) m6A CDS       24981863//27371828//22575960//22608085
chr9:32552482-32552483(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-3p
Exosome Primary dendritic cells|T cell line (J77)     21505438
TOPORS
Chromatin K562 cells     -
Exosome Blood     -
Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-3p
Interactor2: TOPORS

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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