Detail Information

Basic Information:


  VIRBase ID:  

VHID00378408

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:           PRKAA1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-3p PRKAA1
miRBase
Accession/Entrez ID		 MIMAT0003718 5562
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - AMPK//AMPKa1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRKAA1
chr5:40770799(-) A-I      intronic
chr5:40777930(-) A-I      intronic
chr5:40785479(-) A-I      intronic
chr5:40785524(-) A-I      intronic
chr5:40789091(-) A-I      intronic
chr5:40789096(-) A-I      intronic
chr5:40789121(-) A-I      intronic
chr5:40789147(-) A-I      intronic
chr5:40789256(-) A-I      intronic
chr5:40789307(-) A-I      intronic
chr5:40777844(-) A-I      intronic
chr5:40770805(-) A-I      intronic
chr5:40770541(-) A-I      intronic
chr5:40770485(-) A-I      intronic
chr5:40770373(-) A-I      intronic
chr5:40789230(-) A-I      intronic
chr5:40770360(-) A-I      intronic
chr5:40789141(-) A-I      intronic
chr5:40779030(-) A-I      intronic
chr5:40762291(-) A-I      3'UTR
chr5:40762262(-) A-I      3'UTR
chr5:40762190(-) A-I      3'UTR
chr5:40762141(-) A-I      3'UTR
chr5:40762181(-) A-I      3'UTR
chr5:40789056(-) A-I      intronic
chr5:40770492(-) A-I      intronic
chr5:40777394(-) A-I      intronic
chr5:40788781(-) A-I      intronic
chr5:40785615(-) A-I      intronic
chr5:40778230(-) A-I      intronic
chr5:40771493(-) A-I      intronic
chr5:40764153(-) A-I      ncRNA
chr5:40762119(-) A-I      3'UTR
chr5:40770561(-) A-I      intronic
chr5:40770822(-) A-I      intronic
chr5:40767245(-) A-I      intronic
chr5:40772868(-) A-I      intronic
chr5:40770832(-) A-I      intronic
chr5:40772900(-) A-I      intronic
chr5:40785624(-) A-I      intronic
chr5:40777152(-) A-I      intronic
chr5:40779125(-) A-I      intronic
chr5:40786945(-) A-I      intronic
chr5:40767246(-) A-I      intronic
chr5:40770321(-) A-I      intronic
chr5:40779156(-) A-I      intronic
chr5:40772978(-) A-I      intronic
chr5:40785610(-) A-I      intronic
chr5:40770308(-) A-I      intronic
chr5:40770347(-) A-I      intronic
chr5:40766907(-) A-I      intronic
chr5:40777791(-) A-I      intronic
chr5:40779096(-) A-I      intronic
chr5:40779097(-) A-I      intronic
chr5:40766917(-) A-I      intronic
chr5:40764149(-) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRKAA1
chr5:40762119(-) A-G exon 3'UTR    22484847
chr5:40770720(-) T-C intron -    22484847
chr5:40777394(-) A-G intron -    22484847
chr5:40785610(-) A-G intron -    22484847
chr5:40789299(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRKAA1
chr5:40760600-40760601(-) m6A 3'UTR       24981863
chr5:40760879-40760880(-) m6A 3'UTR       24981863//26404942//22608085
chr5:40761318-40761319(-) m6A 3'UTR       26404942
chr5:40761998-40761999(-) m6A 3'UTR       27773535
chr5:40762037-40762038(-) m6A 3'UTR       27773535
chr5:40762871-40762872(-) m6A 3'UTR       24981863//27773535//22608085
chr5:40762878-40762879(-) m6A 3'UTR       24981863//27773535//22608085
chr5:40762945-40762946(-) m6A CDS       24284625//24981863//27773535//22608085
chr5:40763083-40763084(-) Gm CDS       -
chr5:40763097-40763098(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr5:40764582-40764583(-) m6A exon//intron       24284625//24981863//27773535
chr5:40764596-40764597(-) m6A exon//intron       24284625//24981863//26404942//27773535//22608085
chr5:40764645-40764646(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr5:40764734-40764735(-) m6A CDS//exon       24284625
chr5:40764874-40764875(-) m6A CDS//exon       24284625
chr5:40764967-40764968(-) m6A CDS//exon       24284625
chr5:40765017-40765018(-) m6A CDS//exon       24284625//22608085
chr5:40777680-40777681(-) m6A CDS//exon       24981863//27371828//22575960
chr5:40798240-40798241(-) m6A CDS//exon       24284625//25456834//24981863//27371828//22575960
chr5:40798282-40798283(-) m6A CDS//exon       24284625//25456834//24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-3p
Exosome Primary dendritic cells|T cell line (J77)     21505438
PRKAA1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-3p
Interactor2: PRKAA1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep
Support Database RepTar//VmiReg

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