Basic Information:

  VIRBase ID:  

VHID00378037

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:  MIMAT0003718          LRP3:  NM_002333     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-3p	LRP3
miRBase Accession/Entrez ID	MIMAT0003718	4037
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRP3	chr19:33688304(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRP3	chr19:33695070(+) A-I intron -    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRP3	chr19:33668576-33668577(+) m6A 5'UTR       - chr19:33668582-33668583(+) m6A 5'UTR       - chr19:33668603-33668604(+) m6A 5'UTR       24209618 chr19:33668625-33668626(+) m6A 5'UTR       24209618 chr19:33685636-33685637(+) m6A 5'UTR//intron       24209618//25456834//24981863//27773536 chr19:33687638-33687639(+) m6A 5'UTR//CDS       - chr19:33687657-33687658(+) m6A 5'UTR//CDS//exon       24284625 chr19:33694788-33694789(+) m6A exon//intron       24284625 chr19:33695355-33695356(+) m6A exon//intron       25456834 chr19:33695366-33695367(+) m6A exon//intron       25456834 chr19:33695389-33695390(+) m6A exon//intron       25456834 chr19:33695404-33695405(+) m6A exon//intron       25456834 chr19:33695432-33695433(+) m6A exon//intron       25456834 chr19:33695587-33695588(+) m6A CDS//exon       - chr19:33695784-33695785(+) m6A exon//intron       24284625 chr19:33696321-33696322(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696391-33696392(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696481-33696482(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696511-33696512(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696535-33696536(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696544-33696545(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696572-33696573(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33696631-33696632(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr19:33696966-33696967(+) Y CDS//exon       26075521 chr19:33697027-33697028(+) m6A CDS//exon       24284625//24981863 chr19:33697111-33697112(+) m6A CDS//exon       24284625 chr19:33697993-33697994(+) m6A CDS//exon       24284625//25456834 chr19:33698064-33698065(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:33698134-33698135(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:33698161-33698162(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:33698201-33698202(+) m6A CDS//exon       24284625//25456834//24981863//26404942//22575960//22608085 chr19:33698236-33698237(+) m6A CDS//exon       24284625//25456834//24981863//26404942//22575960//22608085 chr19:33698257-33698258(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:33698263-33698264(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:33698341-33698342(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:33698416-33698417(+) m6A CDS//exon       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-3p	Exosome Primary dendritic cells|T cell line (J77)     21505438
	LRP3	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-3p
Interactor2: LRP3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg