Detail Information

Basic Information:


  VIRBase ID:  

VHID00377468

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:           CSNK2A2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-3p CSNK2A2
miRBase
Accession/Entrez ID		 MIMAT0003718 1459
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CK2A2//CK2alpha'//CSNK2A1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CSNK2A2
chr16:58205847(-) A-I      intronic
chr16:58205839(-) A-I      intronic
chr16:58205872(-) A-I      intronic
chr16:58203390(-) A-I      intronic
chr16:58205821(-) A-I      intronic
chr16:58203850(-) A-I      intronic
chr16:58205344(-) A-I      intronic
chr16:58205278(-) A-I      intronic
chr16:58203372(-) A-I      intronic
chr16:58203352(-) A-I      intronic
chr16:58203351(-) A-I      intronic
chr16:58203119(-) A-I      intronic
chr16:58202952(-) A-I      intronic
chr16:58202891(-) A-I      intronic
chr16:58205345(-) A-I      intronic
chr16:58203193(-) A-I      intronic
chr16:58205972(-) A-I      intronic
chr16:58203358(-) A-I      intronic
chr16:58203009(-) A-I      intronic
chr16:58203276(-) A-I      intronic
chr16:58203744(-) A-I      intronic
chr16:58205303(-) A-I      intronic
chr16:58203199(-) A-I      intronic
chr16:58203365(-) A-I      intronic
chr16:58205777(-) A-I      intronic
chr16:58213293(-) A-I      intronic
chr16:58205341(-) A-I      intronic
chr16:58206022(-) A-I      intronic
chr16:58203097(-) A-I      intronic
chr16:58203011(-) A-I      intronic
chr16:58203187(-) A-I      intronic
chr16:58206002(-) A-I      intronic
chr16:58203382(-) A-I      intronic
chr16:58205992(-) A-I      intronic
chr16:58203334(-) A-I      intronic
chr16:58216178(-) A-I      intronic
chr16:58203842(-) A-I      intronic
chr16:58203874(-) A-I      intronic
chr16:58205258(-) A-I      intronic
chr16:58203008(-) A-I      intronic
chr16:58212285(-) A-I      intronic
chr16:58205172(-) A-I      intronic
chr16:58212291(-) A-I      intronic
chr16:58203295(-) A-I      intronic
chr16:58205315(-) A-I      intronic
chr16:58205264(-) A-I      intronic
chr16:58202969(-) A-I      intronic
chr16:58202942(-) A-I      intronic
chr16:58202842(-) A-I      intronic
chr16:58205841(-) A-I      intronic
chr16:58203109(-) A-I      intronic
chr16:58213296(-) A-I      intronic
chr16:58203911(-) A-I      intronic
chr16:58213403(-) A-I      intronic
chr16:58202998(-) A-I      intronic
chr16:58202985(-) A-I      intronic
chr16:58202916(-) A-I      intronic
chr16:58203010(-) A-I      intronic
chr16:58203766(-) A-I      intronic
chr16:58212280(-) A-I      intronic
chr16:58202928(-) A-I      intronic
chr16:58205287(-) A-I      intronic
chr16:58205222(-) A-I      intronic
chr16:58203102(-) A-I      intronic
chr16:58205247(-) A-I      intronic
chr16:58203841(-) A-I      intronic
chr16:58230414(-) A-I      intronic
chr16:58203059(-) A-I      intronic
chr16:58203247(-) A-I      intronic
chr16:58203786(-) A-I      intronic
chr16:58230402(-) A-I      intronic
chr16:58205184(-) A-I      intronic
chr16:58202979(-) A-I      intronic
chr16:58203309(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CSNK2A2
chr16:58202916(-) A-I intron -    22327324
chr16:58203358(-) A-G intron -    22484847
chr16:58203365(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CSNK2A2
chr16:58191908-58191909(-) m6A 3'UTR//exon       24981863//27773535
chr16:58191932-58191933(-) m6A 3'UTR//exon       24981863//27773535
chr16:58192094-58192095(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr16:58192128-58192129(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr16:58192133-58192134(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr16:58192165-58192166(-) m6A 3'UTR//exon       24981863//27773535
chr16:58192215-58192216(-) m6A 3'UTR//exon       27773535
chr16:58192221-58192222(-) m6A 3'UTR//exon       27773535
chr16:58193463-58193464(-) m6A 3'UTR//intron       27773535
chr16:58193606-58193607(-) m6A 3'UTR//intron       24284625//27773535//22575960//22608085
chr16:58193687-58193688(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr16:58193706-58193707(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr16:58193732-58193733(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr16:58193808-58193809(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr16:58193847-58193848(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr16:58193885-58193886(-) m6A 3'UTR//intron       27773535//22608085
chr16:58193963-58193964(-) m6A 3'UTR//intron       27773535//22608085
chr16:58194050-58194051(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr16:58194096-58194097(-) m6A 3'UTR//intron       24981863//28052920//27773535//22608085
chr16:58194149-58194150(-) m6A 3'UTR//intron       24981863//28052920//27773535//22608085
chr16:58194173-58194174(-) m6A 3'UTR//intron       24981863//28052920//27773535
chr16:58194236-58194237(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194244-58194245(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194274-58194275(-) m6A 3'UTR//intron       27773535
chr16:58194348-58194349(-) m6A 3'UTR//intron       27773535
chr16:58194664-58194665(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194708-58194709(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194725-58194726(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194733-58194734(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194751-58194752(-) m6A 3'UTR//intron       24981863//27773535
chr16:58194825-58194826(-) m6A 3'UTR//intron       27773535
chr16:58194856-58194857(-) m6A 3'UTR//intron       27773535
chr16:58195535-58195536(-) m6A 3'UTR//intron       27773535
chr16:58195559-58195560(-) m6A 3'UTR//intron       27773535
chr16:58195576-58195577(-) m6A 3'UTR//intron       27773535
chr16:58195601-58195602(-) m6A 3'UTR//intron       27773535
chr16:58195623-58195624(-) m6A 3'UTR//intron       24284625//27773535
chr16:58195693-58195694(-) m6A 3'UTR//intron       24284625//27773535
chr16:58195969-58195970(-) m6A 3'UTR//intron       -
chr16:58197700-58197701(-) m6A 3'UTR//intron       24981863//22608085
chr16:58197805-58197806(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:58197836-58197837(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr16:58197895-58197896(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr16:58197908-58197909(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr16:58197914-58197915(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr16:58197927-58197928(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr16:58197971-58197972(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr16:58198014-58198015(-) m6A CDS//exon       24284625//24981863//27773535//22575960
chr16:58199500-58199501(-) m6A CDS//exon       27773535
chr16:58199531-58199532(-) m6A CDS//exon       27773535
chr16:58199570-58199571(-) m6A CDS//exon       27773535
chr16:58199588-58199589(-) m6A CDS//exon       27773535
chr16:58200489-58200490(-) m6A CDS//exon       27773535
chr16:58200520-58200521(-) m6A CDS//exon       27773535
chr16:58200552-58200553(-) m6A CDS//exon       27773535
chr16:58220665-58220666(-) m6A CDS//exon       27773535
chr16:58220699-58220700(-) m6A CDS//exon       27773535
chr16:58220713-58220714(-) m6A CDS//exon       27773535
chr16:58230717-58230718(-) m6A CDS       24209618//27773535
chr16:58231563-58231564(-) m6A CDS       24209618//27773535
chr16:58231590-58231591(-) m6A CDS       24209618//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-3p
Exosome Primary dendritic cells|T cell line (J77)     21505438
CSNK2A2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-3p
Interactor2: CSNK2A2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA
Support Database RepTar//VmiReg

Starting a new search, please wait ...