Basic Information:

  VIRBase ID:  

VHID00377146

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-3p:  MIMAT0003718          ADCY9:  NM_001116     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-3p	ADCY9
miRBase Accession/Entrez ID	MIMAT0003718	115
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AC9//ACIX

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ADCY9	chr16:4048350(-) A-I      intronic chr16:4046235(-) A-I      intronic chr16:4046224(-) A-I      intronic chr16:4046219(-) A-I      intronic chr16:4046205(-) A-I      intronic chr16:4046199(-) A-I      intronic chr16:4046190(-) A-I      intronic chr16:4046189(-) A-I      intronic chr16:4045347(-) A-I      intronic chr16:4045343(-) A-I      intronic chr16:4045334(-) A-I      intronic chr16:4040906(-) A-I      intronic chr16:4040861(-) A-I      intronic chr16:4040391(-) A-I      intronic chr16:4040363(-) A-I      intronic chr16:4040355(-) A-I      intronic chr16:4040345(-) A-I      intronic chr16:4040339(-) A-I      intronic chr16:4018985(-) A-I      intronic chr16:4018975(-) A-I      intronic chr16:4018968(-) A-I      intronic chr16:4018961(-) A-I      intronic chr16:4018958(-) A-I      intronic chr16:4149072(-) A-I      intronic chr16:4149078(-) A-I      intronic chr16:4158480(-) A-I      intronic chr16:4158486(-) A-I      intronic chr16:4139507(-) A-I      intronic chr16:4160467(-) A-I      intronic chr16:4139505(-) A-I      intronic chr16:4041988(-) A-I      intronic chr16:4158503(-) A-I      intronic chr16:4139527(-) A-I      intronic chr16:4048360(-) A-I      intronic chr16:4048376(-) A-I      intronic chr16:4160447(-) A-I      intronic chr16:4160483(-) A-I      intronic chr16:4139539(-) A-I      intronic chr16:4139550(-) A-I      intronic chr16:4149071(-) A-I      intronic chr16:4149066(-) A-I      intronic chr16:4078950(-) A-I      intronic chr16:4048390(-) A-I      intronic chr16:4048386(-) A-I      intronic chr16:4048368(-) A-I      intronic chr16:4052990(-) A-I      intronic chr16:4053618(-) A-I      intronic chr16:4053726(-) A-I      intronic chr16:4067129(-) A-I      intronic chr16:4067146(-) A-I      intronic chr16:4069957(-) A-I      intronic chr16:4078909(-) A-I      intronic chr16:4078910(-) A-I      intronic chr16:4078914(-) A-I      intronic chr16:4078924(-) A-I      intronic chr16:4079740(-) A-I      intronic chr16:4082648(-) A-I      intronic chr16:4082779(-) A-I      intronic chr16:4082784(-) A-I      intronic chr16:4083471(-) A-I      intronic chr16:4084647(-) A-I      intronic chr16:4087058(-) A-I      intronic chr16:4089993(-) A-I      intronic chr16:4089994(-) A-I      intronic chr16:4090493(-) A-I      intronic chr16:4090550(-) A-I      intronic chr16:4091367(-) A-I      intronic chr16:4091383(-) A-I      intronic chr16:4091393(-) A-I      intronic chr16:4091396(-) A-I      intronic chr16:4091397(-) A-I      intronic chr16:4091845(-) A-I      intronic chr16:4095408(-) A-I      intronic chr16:4095413(-) A-I      intronic chr16:4095433(-) A-I      intronic chr16:4095468(-) A-I      intronic chr16:4095474(-) A-I      intronic chr16:4095484(-) A-I      intronic chr16:4095594(-) A-I      intronic chr16:4104736(-) A-I      intronic chr16:4104753(-) A-I      intronic chr16:4114566(-) A-I      intronic chr16:4116417(-) A-I      intronic chr16:4116484(-) A-I      intronic chr16:4033695(-) A-I      intronic chr16:4033794(-) A-I      intronic chr16:4033967(-) A-I      intronic chr16:4035237(-) A-I      intronic chr16:4138369(-) A-I      intronic chr16:4048455(-) A-I      intronic chr16:4052984(-) A-I      intronic chr16:4039504(-) A-I      intronic chr16:4118573(-) A-I      intronic chr16:4157365(-) A-I      intronic chr16:4039508(-) A-I      intronic chr16:4039599(-) A-I      intronic chr16:4040250(-) A-I      intronic chr16:4157369(-) A-I      intronic chr16:4040877(-) A-I      intronic chr16:4040893(-) A-I      intronic chr16:4045261(-) A-I      intronic chr16:4158404(-) A-I      intronic chr16:4045274(-) A-I      intronic chr16:4145056(-) A-I      intronic chr16:4143754(-) A-I      intronic chr16:4143698(-) A-I      intronic chr16:4142208(-) A-I      intronic chr16:4138457(-) A-I      intronic chr16:4138441(-) A-I      intronic chr16:4138424(-) A-I      intronic chr16:4052989(-) A-I      intronic chr16:4160499(-) A-I      intronic chr16:4138360(-) A-I      intronic chr16:4138018(-) A-I      intronic chr16:4137942(-) A-I      intronic chr16:4137301(-) A-I      intronic chr16:4136849(-) A-I      intronic chr16:4157489(-) A-I      intronic chr16:4158402(-) A-I      intronic chr16:4158410(-) A-I      intronic chr16:4157518(-) A-I      intronic chr16:4158451(-) A-I      intronic chr16:4158471(-) A-I      intronic chr16:4158490(-) A-I      intronic chr16:4158591(-) A-I      intronic chr16:4158774(-) A-I      intronic chr16:4158775(-) A-I      intronic chr16:4158794(-) A-I      intronic chr16:4158803(-) A-I      intronic chr16:4158804(-) A-I      intronic chr16:4158855(-) A-I      intronic chr16:4158867(-) A-I      intronic chr16:4158880(-) A-I      intronic chr16:4158882(-) A-I      intronic chr16:4158886(-) A-I      intronic chr16:4158900(-) A-I      intronic chr16:4158944(-) A-I      intronic chr16:4118572(-) A-I      intronic chr16:4160529(-) A-I      intronic chr16:4134510(-) A-I      intronic chr16:4134509(-) A-I      intronic chr16:4116532(-) A-I      intronic chr16:4134309(-) A-I      intronic chr16:4132256(-) A-I      intronic chr16:4132248(-) A-I      intronic chr16:4129470(-) A-I      intronic chr16:4155504(-) A-I      intronic chr16:4125374(-) A-I      intronic chr16:4125253(-) A-I      intronic chr16:4125126(-) A-I      intronic chr16:4125096(-) A-I      intronic chr16:4125059(-) A-I      intronic chr16:4149972(-) A-I      intronic chr16:4145786(-) A-I      intronic chr16:4145275(-) A-I      intronic chr16:4145071(-) A-I      intronic chr16:4045301(-) A-I      intronic chr16:4045317(-) A-I      intronic chr16:4045372(-) A-I      intronic chr16:4124994(-) A-I      intronic chr16:4121950(-) A-I      intronic chr16:4046144(-) A-I      intronic chr16:4047031(-) A-I      intronic chr16:4048449(-) A-I      intronic chr16:4121864(-) A-I      intronic chr16:4095838(-) A-I      intronic chr16:4052022(-) A-I      intronic chr16:4048048(-) A-I      intronic chr16:4096047(-) A-I      intronic chr16:4054219(-) A-I      intronic chr16:4158588(-) A-I      intronic chr16:4155796(-) A-I      intronic chr16:4044585(-) A-I      intronic chr16:4158550(-) A-I      intronic chr16:4095984(-) A-I      intronic chr16:4125236(-) A-I      intronic chr16:4151333(-) A-I      intronic chr16:4096051(-) A-I      intronic chr16:4155811(-) A-I      intronic chr16:4129458(-) A-I      intronic chr16:4149906(-) A-I      intronic chr16:4136888(-) A-I      intronic chr16:4084692(-) A-I      intronic chr16:4051888(-) A-I      intronic chr16:4040977(-) A-I      intronic chr16:4092267(-) A-I      intronic chr16:4123534(-) A-I      intronic chr16:4154591(-) A-I      intronic chr16:4145760(-) A-I      intronic chr16:4041614(-) A-I      intronic chr16:4137932(-) A-I      intronic chr16:4137528(-) A-I      intronic chr16:4087099(-) A-I      intronic chr16:4160658(-) A-I      intronic chr16:4065038(-) A-I      intronic chr16:4123670(-) A-I      intronic chr16:4152690(-) A-I      intronic chr16:4046118(-) A-I      intronic chr16:4040978(-) A-I      intronic chr16:4104577(-) A-I      intronic chr16:4048317(-) A-I      intronic chr16:4046933(-) A-I      intronic chr16:4033969(-) A-I      intronic chr16:4125435(-) A-I      intronic chr16:4034007(-) A-I      intronic chr16:4106415(-) A-I      intronic chr16:4036597(-) A-I      intronic chr16:4042050(-) A-I      intronic chr16:4045307(-) A-I      intronic chr16:4035426(-) A-I      intronic chr16:4065079(-) A-I      intronic chr16:4106334(-) A-I      intronic chr16:4145866(-) A-I      intronic chr16:4069105(-) A-I      intronic chr16:4158467(-) A-I      intronic chr16:4145119(-) A-I      intronic chr16:4128303(-) A-I      intronic chr16:4153769(-) A-I      intronic chr16:4059395(-) A-I      intronic chr16:4089495(-) A-I      intronic chr16:4150730(-) A-I      intronic chr16:4046963(-) A-I      intronic chr16:4095768(-) A-I      intronic chr16:4137939(-) A-I      intronic chr16:4158543(-) A-I      intronic chr16:4091991(-) A-I      intronic chr16:4154881(-) A-I      intronic chr16:4138045(-) A-I      intronic chr16:4121290(-) A-I      intronic chr16:4046913(-) A-I      intronic chr16:4137966(-) A-I      intronic chr16:4035404(-) A-I      intronic chr16:4145812(-) A-I      intronic chr16:4128345(-) A-I      intronic chr16:4036596(-) A-I      intronic chr16:4105832(-) A-I      intronic chr16:4017277(-) A-I      intronic chr16:4152523(-) A-I      intronic chr16:4142185(-) A-I      intronic chr16:4158551(-) A-I      intronic chr16:4047983(-) A-I      intronic chr16:4136933(-) A-I      intronic chr16:4155786(-) A-I      intronic chr16:4116516(-) A-I      intronic chr16:4099902(-) A-I      intronic chr16:4033924(-) A-I      intronic chr16:4145721(-) A-I      intronic chr16:4138051(-) A-I      intronic chr16:4124959(-) A-I      intronic chr16:4134547(-) A-I      intronic chr16:4124919(-) A-I      intronic chr16:4089928(-) A-I      intronic chr16:4036852(-) A-I      intronic chr16:4091860(-) A-I      intronic chr16:4161373(-) A-I      intronic chr16:4135215(-) A-I      intronic chr16:4138071(-) A-I      intronic chr16:4153724(-) A-I      intronic chr16:4134632(-) A-I      intronic chr16:4154906(-) A-I      intronic chr16:4125277(-) A-I      intronic chr16:4155766(-) A-I      intronic chr16:4154530(-) A-I      intronic chr16:4158582(-) A-I      intronic chr16:4136865(-) A-I      intronic chr16:4158973(-) A-I      intronic chr16:4065214(-) A-I      intronic chr16:4152587(-) A-I      intronic chr16:4124997(-) A-I      intronic chr16:4039661(-) A-I      intronic chr16:4073726(-) A-I      intronic chr16:4064577(-) A-I      intronic chr16:4145046(-) A-I      intronic chr16:4135268(-) A-I      intronic chr16:4116520(-) A-I      intronic chr16:4132159(-) A-I      intronic chr16:4041043(-) A-I      intronic chr16:4118582(-) A-I      intronic chr16:4101205(-) A-I      intronic chr16:4137944(-) A-I      intronic chr16:4081783(-) A-I      intronic chr16:4150353(-) A-I      intronic chr16:4138381(-) A-I      intronic chr16:4073748(-) A-I      intronic chr16:4091405(-) A-I      intronic chr16:4137938(-) A-I      intronic chr16:4155732(-) A-I      intronic chr16:4034038(-) A-I      intronic chr16:4158553(-) A-I      intronic chr16:4033804(-) A-I      intronic chr16:4123361(-) A-I      intronic chr16:4106458(-) A-I      intronic chr16:4046117(-) A-I      intronic chr16:4104750(-) A-I      intronic chr16:4044595(-) A-I      intronic chr16:4123686(-) A-I      intronic chr16:4092010(-) A-I      intronic chr16:4149849(-) A-I      intronic chr16:4035335(-) A-I      intronic chr16:4035361(-) A-I      intronic chr16:4138035(-) A-I      intronic chr16:4157295(-) A-I      intronic chr16:4054181(-) A-I      intronic chr16:4035305(-) A-I      intronic chr16:4046179(-) A-I      intronic chr16:4158557(-) A-I      intronic chr16:4118626(-) A-I      intronic chr16:4051610(-) A-I      intronic chr16:4088018(-) A-I      intronic chr16:4134385(-) A-I      intronic chr16:4065215(-) A-I      intronic chr16:4047832(-) A-I      intronic chr16:4125083(-) A-I      intronic chr16:4136854(-) A-I      intronic chr16:4158645(-) A-I      intronic chr16:4137291(-) A-I      intronic chr16:4151530(-) A-I      intronic chr16:4089580(-) A-I      intronic chr16:4069097(-) A-I      intronic chr16:4155841(-) A-I      intronic chr16:4151531(-) A-I      intronic chr16:4033673(-) A-I      intronic chr16:4128464(-) A-I      intronic chr16:4139240(-) A-I      intronic chr16:4080592(-) A-I      intronic chr16:4134470(-) A-I      intronic chr16:4033979(-) A-I      intronic chr16:4091954(-) A-I      intronic chr16:4095960(-) A-I      intronic chr16:4041996(-) A-I      intronic chr16:4089532(-) A-I      intronic chr16:4158568(-) A-I      intronic chr16:4086602(-) A-I      intronic chr16:4053612(-) A-I      intronic chr16:4136898(-) A-I      intronic chr16:4035349(-) A-I      intronic chr16:4088255(-) A-I      intronic chr16:4149848(-) A-I      intronic chr16:4040433(-) A-I      intronic chr16:4089874(-) A-I      intronic chr16:4045429(-) A-I      intronic chr16:4123288(-) A-I      intronic chr16:4045226(-) A-I      intronic chr16:4116499(-) A-I      intronic chr16:4149881(-) A-I      intronic chr16:4041596(-) A-I      intronic chr16:4079018(-) A-I      intronic chr16:4107257(-) A-I      intronic chr16:4120831(-) A-I      intronic chr16:4142189(-) A-I      intronic chr16:4041592(-) A-I      intronic chr16:4149965(-) A-I      intronic chr16:4151311(-) A-I      intronic chr16:4158545(-) A-I      intronic chr16:4113480(-) A-I      intronic chr16:4124985(-) A-I      intronic chr16:4035410(-) A-I      intronic chr16:4017801(-) A-I      intronic chr16:4157500(-) A-I      intronic chr16:4044634(-) A-I      intronic chr16:4104710(-) A-I      intronic chr16:4158646(-) A-I      intronic chr16:4042071(-) A-I      intronic chr16:4123234(-) A-I      intronic chr16:4041960(-) A-I      intronic chr16:4054013(-) A-I      intronic chr16:4153585(-) A-I      intronic chr16:4125407(-) A-I      intronic chr16:4090622(-) A-I      intronic chr16:4141537(-) A-I      intronic chr16:4142219(-) A-I      intronic chr16:4118571(-) A-I      intronic chr16:4139636(-) A-I      intronic chr16:4133918(-) A-I      intronic chr16:4087275(-) A-I      intronic chr16:4035252(-) A-I      intronic chr16:4152819(-) A-I      intronic chr16:4125377(-) A-I      intronic chr16:4148355(-) A-I      intronic chr16:4145239(-) A-I      intronic chr16:4139578(-) A-I      intronic chr16:4139379(-) A-I      intronic chr16:4125066(-) A-I      intronic chr16:4149104(-) A-I      intronic chr16:4046899(-) A-I      intronic chr16:4086636(-) A-I      intronic chr16:4044594(-) A-I      intronic chr16:4138371(-) A-I      intronic chr16:4090631(-) A-I      intronic chr16:4158442(-) A-I      intronic chr16:4158495(-) A-I      intronic chr16:4139372(-) A-I      intronic chr16:4125268(-) A-I      intronic chr16:4033802(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ADCY9	chr16:4013572-4013573(-) m6A 3'UTR//intron       27773535 chr16:4013667-4013668(-) m6A 3'UTR//intron       27773535 chr16:4014114-4014115(-) m6A 3'UTR//intron       27773535 chr16:4014256-4014257(-) m6A 3'UTR//intron       27773535 chr16:4015073-4015074(-) m6A 3'UTR//intron       24284625 chr16:4015385-4015386(-) m6A 3'UTR//intron       24284625//24981863//27773535//22575960//22608085 chr16:4015439-4015440(-) m6A 3'UTR//intron       24284625//24981863//27773535//22575960//22608085 chr16:4015490-4015491(-) m6A 3'UTR//intron       24284625//24981863//27773535//22575960//22608085 chr16:4015530-4015531(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr16:4015572-4015573(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr16:4015733-4015734(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:4015808-4015809(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:4015831-4015832(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr16:4015907-4015908(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4015966-4015967(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4015971-4015972(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016055-4016056(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016122-4016123(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016155-4016156(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016244-4016245(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016271-4016272(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016475-4016476(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr16:4016512-4016513(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016521-4016522(-) Am CDS//intron       - chr16:4016538-4016539(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016565-4016566(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016616-4016617(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016679-4016680(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4016692-4016693(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27773536//22575960//22608085 chr16:4016736-4016737(-) m6A CDS//intron       24284625//25456834//27773535//27773536//22575960//22608085 chr16:4016751-4016752(-) m6A CDS//intron       24284625//27773535//27773536//22575960 chr16:4016760-4016761(-) m6A CDS//intron       24284625//27773535//27773536//22575960 chr16:4016955-4016956(-) m6A CDS//intron       24284625 chr16:4031796-4031797(-) m6A exon//intron       24284625 chr16:4031809-4031810(-) m6A exon//intron       24284625 chr16:4031819-4031820(-) m6A exon//intron       24284625 chr16:4032576-4032577(-) m6A exon//intron       27773535 chr16:4032593-4032594(-) m6A exon//intron       27773535 chr16:4032612-4032613(-) m6A exon//intron       24981863//27773535 chr16:4032652-4032653(-) Tm exon//intron       - chr16:4032667-4032668(-) m6A exon//intron       24284625//24981863//27773535 chr16:4032689-4032690(-) m6A exon//intron       24284625//24981863//27773535 chr16:4032708-4032709(-) m6A exon//intron       24284625//27773535 chr16:4032730-4032731(-) m6A exon//intron       24284625//27773535 chr16:4032774-4032775(-) m6A exon//intron       27773535 chr16:4032842-4032843(-) m6A exon//intron       27773535 chr16:4032875-4032876(-) m6A exon//intron       27773535 chr16:4032901-4032902(-) m6A exon//intron       27773535 chr16:4032927-4032928(-) m6A exon//intron       24284625//27773535 chr16:4032957-4032958(-) m6A exon//intron       24284625//27773535 chr16:4033033-4033034(-) m6A exon//intron       - chr16:4042149-4042150(-) m6A 3'UTR//CDS//exon//intron       27773535 chr16:4042197-4042198(-) m6A 3'UTR//CDS//exon//intron       27773535 chr16:4042230-4042231(-) m6A 3'UTR//CDS//exon//intron       27773535 chr16:4043416-4043417(-) m6A 3'UTR//CDS//exon       - chr16:4154716-4154717(-) Tm intron       - chr16:4163899-4163900(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr16:4163989-4163990(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr16:4164115-4164116(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:4164146-4164147(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr16:4164340-4164341(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr16:4164478-4164479(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr16:4164671-4164672(-) m6A CDS       24284625 chr16:4164920-4164921(-) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr16:4165020-4165021(-) m6A CDS       24284625//24981863//22575960//22608085 chr16:4165109-4165110(-) m6A CDS       24284625//24981863//27773536//22575960 chr16:4165147-4165148(-) m6A CDS       24284625//27773536//22575960 chr16:4165168-4165169(-) m6A CDS       24284625//27773536//22575960 chr16:4165267-4165268(-) m6A CDS       24284625//24981863//27773536//22575960//22608085 chr16:4165372-4165373(-) m6A CDS       24284625//27371828//27773536 chr16:4165452-4165453(-) m6A 5'UTR       24284625//27371828//27773536//22575960//22608085 chr16:4165706-4165707(-) m6A 5'UTR       24284625//27371828//27773536//22575960//22608085 chr16:4165847-4165848(-) m6A 5'UTR       24284625//24209618//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-3p	Exosome Primary dendritic cells|T cell line (J77)     21505438
	ADCY9	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-3p
Interactor2: ADCY9

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Rep//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.