Basic Information:

  VIRBase ID:  

VHID00375180

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART18-5p:  MIMAT0003717          NUP153:  NM_001278210     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART18-5p	NUP153
miRBase Accession/Entrez ID	MIMAT0003717	9972
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HNUP153//N153

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NUP153	chr6:17640921(-) A-I      intronic chr6:17636560(-) A-I      intronic chr6:17636458(-) A-I      intronic chr6:17636454(-) A-I      intronic chr6:17636444(-) A-I      intronic chr6:17636417(-) A-I      intronic chr6:17636408(-) A-I      intronic chr6:17636393(-) A-I      intronic chr6:17635840(-) A-I      intronic chr6:17635828(-) A-I      intronic chr6:17635827(-) A-I      intronic chr6:17635806(-) A-I      intronic chr6:17635765(-) A-I      intronic chr6:17634779(-) A-I      intronic chr6:17623355(-) A-I      intronic chr6:17623352(-) A-I      intronic chr6:17623347(-) A-I      intronic chr6:17623233(-) A-I      intronic chr6:17623205(-) A-I      intronic chr6:17623180(-) A-I      intronic chr6:17622682(-) A-I      intronic chr6:17622498(-) A-I      intronic chr6:17622446(-) A-I      intronic chr6:17622422(-) A-I      intronic chr6:17689949(-) A-I      intronic chr6:17689950(-) A-I      intronic chr6:17643537(-) A-I      intronic chr6:17643459(-) A-I      intronic chr6:17641850(-) A-I      intronic chr6:17641130(-) A-I      intronic chr6:17641127(-) A-I      intronic chr6:17641016(-) A-I      intronic chr6:17641008(-) A-I      intronic chr6:17641006(-) A-I      intronic chr6:17643640(-) A-I      intronic chr6:17651439(-) A-I      intronic chr6:17653440(-) A-I      intronic chr6:17653443(-) A-I      intronic chr6:17655967(-) A-I      intronic chr6:17666152(-) A-I      intronic chr6:17620243(-) A-I      intronic chr6:17620242(-) A-I      intronic chr6:17666133(-) A-I      intronic chr6:17619048(-) A-I      intronic chr6:17619002(-) A-I      intronic chr6:17618961(-) A-I      intronic chr6:17618929(-) A-I      intronic chr6:17618849(-) A-I      intronic chr6:17617976(-) A-I      intronic chr6:17617908(-) A-I      intronic chr6:17617871(-) A-I      intronic chr6:17617187(-) A-I      intronic chr6:17617159(-) A-I      intronic chr6:17617152(-) A-I      intronic chr6:17617147(-) A-I      intronic chr6:17617083(-) A-I      intronic chr6:17617078(-) A-I      intronic chr6:17617066(-) A-I      intronic chr6:17617053(-) A-I      intronic chr6:17617048(-) A-I      intronic chr6:17666127(-) A-I      intronic chr6:17661441(-) A-I      intronic chr6:17652255(-) A-I      intronic chr6:17652259(-) A-I      intronic chr6:17652267(-) A-I      intronic chr6:17654685(-) A-I      intronic chr6:17654720(-) A-I      intronic chr6:17654754(-) A-I      intronic chr6:17655796(-) A-I      intronic chr6:17655852(-) A-I      intronic chr6:17655853(-) A-I      intronic chr6:17655855(-) A-I      intronic chr6:17655879(-) A-I      intronic chr6:17655903(-) A-I      intronic chr6:17656232(-) A-I      intronic chr6:17656244(-) A-I      intronic chr6:17656268(-) A-I      intronic chr6:17656273(-) A-I      intronic chr6:17656336(-) A-I      intronic chr6:17656359(-) A-I      intronic chr6:17656390(-) A-I      intronic chr6:17656738(-) A-I      intronic chr6:17657676(-) A-I      intronic chr6:17657683(-) A-I      intronic chr6:17657726(-) A-I      intronic chr6:17658413(-) A-I      intronic chr6:17658445(-) A-I      intronic chr6:17658490(-) A-I      intronic chr6:17658515(-) A-I      intronic chr6:17658565(-) A-I      intronic chr6:17658570(-) A-I      intronic chr6:17661433(-) A-I      intronic chr6:17661410(-) A-I      intronic chr6:17657708(-) A-I      intronic chr6:17656292(-) A-I      intronic chr6:17655790(-) A-I      intronic chr6:17655757(-) A-I      intronic chr6:17651508(-) A-I      intronic chr6:17651488(-) A-I      intronic chr6:17651484(-) A-I      intronic chr6:17651452(-) A-I      intronic chr6:17651447(-) A-I      intronic chr6:17651422(-) A-I      intronic chr6:17645633(-) A-I      intronic chr6:17636339(-) A-I      intronic chr6:17636320(-) A-I      intronic chr6:17658436(-) A-I      intronic chr6:17658514(-) A-I      intronic chr6:17658619(-) A-I      intronic chr6:17658623(-) A-I      intronic chr6:17671269(-) A-I      intronic chr6:17659850(-) A-I      intronic chr6:17692181(-) A-I      intronic chr6:17659715(-) A-I      intronic chr6:17694812(-) A-I      intronic chr6:17694831(-) A-I      intronic chr6:17694866(-) A-I      intronic chr6:17699864(-) A-I      intronic chr6:17617153(-) A-I      intronic chr6:17666616(-) A-I      intronic chr6:17645807(-) A-I      intronic chr6:17647260(-) A-I      intronic chr6:17647108(-) A-I      intronic chr6:17647095(-) A-I      intronic chr6:17647056(-) A-I      intronic chr6:17645806(-) A-I      intronic chr6:17645205(-) A-I      intronic chr6:17645179(-) A-I      intronic chr6:17644929(-) A-I      intronic chr6:17643651(-) A-I      intronic chr6:17643591(-) A-I      intronic chr6:17659734(-) A-I      intronic chr6:17659880(-) A-I      intronic chr6:17659881(-) A-I      intronic chr6:17659897(-) A-I      intronic chr6:17659952(-) A-I      intronic chr6:17659953(-) A-I      intronic chr6:17659969(-) A-I      intronic chr6:17659974(-) A-I      intronic chr6:17659975(-) A-I      intronic chr6:17661405(-) A-I      intronic chr6:17661482(-) A-I      intronic chr6:17665092(-) A-I      intronic chr6:17665135(-) A-I      intronic chr6:17665245(-) A-I      intronic chr6:17666530(-) A-I      intronic chr6:17666531(-) A-I      intronic chr6:17666624(-) A-I      intronic chr6:17668403(-) A-I      intronic chr6:17668444(-) A-I      intronic chr6:17668506(-) A-I      intronic chr6:17668528(-) A-I      intronic chr6:17668894(-) A-I      intronic chr6:17668961(-) A-I      intronic chr6:17620253(-) A-I      intronic chr6:17671292(-) A-I      intronic chr6:17674977(-) A-I      intronic chr6:17682204(-) A-I      intronic chr6:17686296(-) A-I      intronic chr6:17686335(-) A-I      intronic chr6:17686723(-) A-I      intronic chr6:17686727(-) A-I      intronic chr6:17686738(-) A-I      intronic chr6:17686787(-) A-I      intronic chr6:17686803(-) A-I      intronic chr6:17686804(-) A-I      intronic chr6:17686807(-) A-I      intronic chr6:17686893(-) A-I      intronic chr6:17689896(-) A-I      intronic chr6:17689935(-) A-I      intronic chr6:17656287(-) A-I      intronic chr6:17668422(-) A-I      intronic chr6:17622424(-) A-I      intronic chr6:17636544(-) A-I      intronic chr6:17618935(-) A-I      intronic chr6:17643575(-) A-I      intronic chr6:17661543(-) A-I      intronic chr6:17661445(-) A-I      intronic chr6:17659806(-) A-I      intronic chr6:17668952(-) A-I      intronic chr6:17672127(-) A-I      intronic chr6:17636558(-) A-I      intronic chr6:17622509(-) A-I      intronic chr6:17645104(-) A-I      intronic chr6:17668908(-) A-I      intronic chr6:17668998(-) A-I      intronic chr6:17671235(-) A-I      intronic chr6:17659832(-) A-I      intronic chr6:17658540(-) A-I      intronic chr6:17692693(-) A-I      intronic chr6:17658374(-) A-I      intronic chr6:17636552(-) A-I      intronic chr6:17674918(-) A-I      intronic chr6:17669412(-) A-I      intronic chr6:17654780(-) A-I      intronic chr6:17657608(-) A-I      intronic chr6:17651282(-) A-I      intronic chr6:17656354(-) A-I      intronic chr6:17645639(-) A-I      intronic chr6:17641986(-) A-I      intronic chr6:17656350(-) A-I      intronic chr6:17667747(-) A-I      intronic chr6:17651413(-) A-I      intronic chr6:17657695(-) A-I      intronic chr6:17654771(-) A-I      intronic chr6:17622588(-) A-I      intronic chr6:17668957(-) A-I      intronic chr6:17697039(-) A-I      intronic chr6:17658470(-) A-I      intronic chr6:17653362(-) A-I      intronic chr6:17645603(-) A-I      intronic chr6:17665221(-) A-I      intronic chr6:17618969(-) A-I      intronic chr6:17655965(-) A-I      intronic chr6:17655862(-) A-I      intronic chr6:17640916(-) A-I      intronic chr6:17657516(-) A-I      intronic chr6:17618977(-) A-I      intronic chr6:17689905(-) A-I      intronic chr6:17661289(-) A-I      intronic chr6:17654664(-) A-I      intronic chr6:17617823(-) A-I      intronic chr6:17656311(-) A-I      intronic chr6:17659855(-) A-I      intronic chr6:17663718(-) A-I      intronic chr6:17671993(-) A-I      intronic chr6:17617127(-) A-I      intronic chr6:17666330(-) A-I      intronic chr6:17663632(-) A-I      intronic chr6:17653165(-) A-I      intronic chr6:17636457(-) A-I      intronic chr6:17617123(-) A-I      intronic chr6:17655867(-) A-I      intronic chr6:17655793(-) A-I      intronic chr6:17678037(-) A-I      intronic chr6:17635923(-) A-I      intronic chr6:17622430(-) A-I      intronic chr6:17654701(-) A-I      intronic chr6:17618042(-) A-I      intronic chr6:17705063(-) A-I      intronic chr6:17655822(-) A-I      intronic chr6:17667759(-) A-I      intronic chr6:17647111(-) A-I      intronic chr6:17661365(-) A-I      intronic chr6:17655941(-) A-I      intronic chr6:17635505(-) A-I      intronic chr6:17659812(-) A-I      intronic chr6:17694065(-) A-I      intronic chr6:17618026(-) A-I      intronic chr6:17692669(-) A-I      intronic chr6:17647084(-) A-I      intronic chr6:17617151(-) A-I      intronic chr6:17656270(-) A-I      intronic chr6:17668965(-) A-I      intronic chr6:17635810(-) A-I      intronic chr6:17654629(-) A-I      intronic chr6:17645663(-) A-I      intronic chr6:17619000(-) A-I      intronic chr6:17668530(-) A-I      intronic chr6:17617902(-) A-I      intronic chr6:17701943(-) A-I      intronic chr6:17657779(-) A-I      intronic chr6:17654732(-) A-I      intronic chr6:17654823(-) A-I      intronic chr6:17668584(-) A-I      intronic chr6:17618070(-) A-I      intronic chr6:17658456(-) A-I      intronic chr6:17653138(-) A-I      intronic chr6:17705155(-) A-I      intronic chr6:17635479(-) A-I      intronic chr6:17617954(-) A-I      intronic chr6:17651407(-) A-I      intronic chr6:17658527(-) A-I      intronic chr6:17635749(-) A-I      intronic chr6:17661302(-) A-I      intronic chr6:17622636(-) A-I      intronic chr6:17668962(-) A-I      intronic chr6:17666083(-) A-I      intronic chr6:17641058(-) A-I      intronic chr6:17661488(-) A-I      intronic chr6:17658505(-) A-I      intronic chr6:17656314(-) A-I      intronic chr6:17689587(-) A-I      intronic chr6:17653375(-) A-I      intronic chr6:17645729(-) A-I      intronic chr6:17617964(-) A-I      intronic chr6:17668857(-) A-I      intronic chr6:17653272(-) A-I      intronic chr6:17617848(-) A-I      intronic chr6:17661341(-) A-I      intronic chr6:17640976(-) A-I      intronic chr6:17623172(-) A-I      intronic chr6:17635925(-) A-I      intronic chr6:17655888(-) A-I      intronic chr6:17640964(-) A-I      intronic chr6:17657713(-) A-I      intronic chr6:17672131(-) A-I      intronic chr6:17663659(-) A-I      intronic chr6:17666662(-) A-I      intronic chr6:17656826(-) A-I      intronic chr6:17634771(-) A-I      intronic chr6:17659800(-) A-I      intronic chr6:17666080(-) A-I      intronic chr6:17658448(-) A-I      intronic chr6:17641052(-) A-I      intronic chr6:17666084(-) A-I      intronic chr6:17657787(-) A-I      intronic chr6:17641513(-) A-I      intronic chr6:17661436(-) A-I      intronic chr6:17636308(-) A-I      intronic chr6:17658480(-) A-I      intronic chr6:17623278(-) A-I      intronic chr6:17656256(-) A-I      intronic chr6:17686303(-) A-I      intronic chr6:17661459(-) A-I      intronic chr6:17654731(-) A-I      intronic chr6:17686898(-) A-I      intronic chr6:17689860(-) A-I      intronic chr6:17635695(-) A-I      intronic chr6:17696051(-) A-I      intronic chr6:17661379(-) A-I      intronic chr6:17666580(-) A-I      intronic chr6:17617119(-) A-I      intronic chr6:17663565(-) A-I      intronic chr6:17620146(-) A-I      intronic chr6:17645217(-) A-I      intronic chr6:17656766(-) A-I      intronic chr6:17668383(-) A-I      intronic chr6:17657673(-) A-I      intronic chr6:17655922(-) A-I      intronic chr6:17622596(-) A-I      intronic chr6:17661544(-) A-I      intronic chr6:17645195(-) A-I      intronic chr6:17636422(-) A-I      intronic chr6:17668592(-) A-I      intronic chr6:17634806(-) A-I      intronic chr6:17689572(-) A-I      intronic chr6:17635619(-) A-I      intronic chr6:17643499(-) A-I      intronic chr6:17647187(-) A-I      intronic chr6:17656286(-) A-I      intronic chr6:17618869(-) A-I      intronic chr6:17617049(-) A-I      intronic chr6:17620207(-) A-I      intronic chr6:17668505(-) A-I      intronic chr6:17634963(-) A-I      intronic chr6:17659883(-) A-I      intronic chr6:17636421(-) A-I      intronic chr6:17655858(-) A-I      intronic chr6:17645556(-) A-I      intronic chr6:17671179(-) A-I      intronic chr6:17672237(-) A-I      intronic chr6:17655878(-) A-I      intronic chr6:17654621(-) A-I      intronic chr6:17641139(-) A-I      intronic chr6:17622493(-) A-I      intronic chr6:17654746(-) A-I      intronic chr6:17656279(-) A-I      intronic chr6:17666663(-) A-I      intronic chr6:17657556(-) A-I      intronic chr6:17645579(-) A-I      intronic chr6:17657528(-) A-I      intronic chr6:17651338(-) A-I      intronic chr6:17659772(-) A-I      intronic chr6:17622513(-) A-I      intronic chr6:17659836(-) A-I      intronic chr6:17636466(-) A-I      intronic chr6:17657712(-) A-I      intronic chr6:17641012(-) A-I      intronic chr6:17640908(-) A-I      intronic chr6:17659809(-) A-I      intronic chr6:17654717(-) A-I      intronic chr6:17699571(-) A-I      intronic chr6:17655805(-) A-I      intronic chr6:17655781(-) A-I      intronic chr6:17663571(-) A-I      intronic chr6:17659801(-) A-I      intronic chr6:17656821(-) A-I      intronic chr6:17618030(-) A-I      intronic chr6:17617154(-) A-I      intronic chr6:17689900(-) A-I      intronic chr6:17658545(-) A-I      intronic chr6:17636520(-) A-I      intronic chr6:17634850(-) A-I      intronic chr6:17645617(-) A-I      intronic chr6:17617252(-) A-I      intronic chr6:17622668(-) A-I      intronic chr6:17668548(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NUP153	chr6:17636479(-) A-I intron -    22327324 chr6:17645617(-) A-I intron -    22327324 chr6:17658037(-) A-I intron -    21960545 chr6:17658623(-) A-I intron -    21960545 chr6:17617049(-) A-G intron -    22484847 chr6:17617073(-) A-G intron -    22484847 chr6:17617119(-) A-G intron -    22484847 chr6:17617151(-) A-G intron -    22484847 chr6:17617154(-) A-G intron -    22484847 chr6:17617157(-) A-G intron -    22484847 chr6:17617252(-) A-G intron -    22484847 chr6:17617891(-) A-G intron -    22484847 chr6:17617902(-) A-G intron -    22484847 chr6:17617954(-) A-G intron -    22484847 chr6:17618935(-) A-G intron -    22484847 chr6:17619069(-) A-G intron -    22484847 chr6:17620146(-) A-G intron -    22484847 chr6:17620207(-) A-G intron -    22484847 chr6:17622430(-) A-G intron -    22484847 chr6:17622493(-) A-G intron -    22484847 chr6:17622636(-) A-G intron -    22484847 chr6:17623172(-) A-G intron -    22484847 chr6:17623274(-) A-G intron -    22484847 chr6:17623278(-) A-G intron -    22484847 chr6:17635479(-) A-G intron -    22484847 chr6:17635505(-) A-G intron -    22484847 chr6:17635619(-) A-G intron -    22484847 chr6:17635695(-) A-G intron -    22484847 chr6:17635757(-) A-G intron -    22484847 chr6:17635923(-) A-G intron -    22484847 chr6:17635925(-) A-G intron -    22484847 chr6:17636382(-) A-G intron -    22484847 chr6:17636402(-) A-G intron -    22484847 chr6:17636418(-) A-G intron -    22484847 chr6:17636421(-) A-G intron -    22484847 chr6:17636422(-) A-G intron -    22484847 chr6:17636457(-) A-G intron -    22484847 chr6:17636466(-) A-G intron -    22484847 chr6:17636479(-) A-G intron -    22484847 chr6:17636519(-) A-G intron -    22484847 chr6:17636520(-) A-G intron -    22484847 chr6:17636552(-) A-G intron -    22484847 chr6:17636558(-) A-G intron -    22484847 chr6:17640946(-) A-G intron -    22484847 chr6:17645195(-) A-G intron -    22484847 chr6:17645217(-) A-G intron -    22484847 chr6:17645280(-) A-G intron -    22484847 chr6:17645603(-) A-G intron -    22484847 chr6:17645617(-) A-G intron -    22484847 chr6:17645805(-) A-G intron -    22484847 chr6:17647072(-) T-C intron -    22484847 chr6:17647084(-) A-G intron -    22484847 chr6:17647111(-) A-G intron -    22484847 chr6:17651413(-) A-G intron -    22484847 chr6:17651474(-) A-G intron -    22484847 chr6:17654681(-) A-G intron -    22484847 chr6:17654707(-) A-G intron -    22484847 chr6:17654717(-) A-G intron -    22484847 chr6:17654730(-) A-G intron -    22484847 chr6:17654746(-) A-G intron -    22484847 chr6:17654776(-) A-G intron -    22484847 chr6:17654823(-) A-G intron -    22484847 chr6:17654824(-) A-G intron -    22484847 chr6:17655705(-) C-T intron -    22484847 chr6:17655781(-) A-G intron -    22484847 chr6:17655782(-) A-G intron -    22484847 chr6:17655813(-) A-G intron -    22484847 chr6:17655822(-) A-G intron -    22484847 chr6:17655823(-) A-G intron -    22484847 chr6:17655858(-) A-G intron -    22484847 chr6:17655862(-) A-G intron -    22484847 chr6:17655864(-) A-G intron -    22484847 chr6:17655888(-) A-G intron -    22484847 chr6:17655898(-) A-G intron -    22484847 chr6:17655927(-) A-G intron -    22484847 chr6:17655965(-) A-G intron -    22484847 chr6:17656279(-) A-G intron -    22484847 chr6:17656286(-) A-G intron -    22484847 chr6:17656311(-) A-G intron -    22484847 chr6:17656314(-) A-G intron -    22484847 chr6:17656324(-) A-G intron -    22484847 chr6:17656344(-) C-G intron -    22484847 chr6:17656350(-) A-G intron -    22484847 chr6:17656354(-) A-G intron -    22484847 chr6:17656744(-) G-A intron -    22484847 chr6:17656766(-) A-G intron -    22484847 chr6:17657522(-) G-T intron -    22484847 chr6:17657528(-) A-G intron -    22484847 chr6:17657569(-) A-G intron -    22484847 chr6:17657687(-) A-G intron -    22484847 chr6:17657695(-) A-G intron -    22484847 chr6:17657712(-) A-G intron -    22484847 chr6:17657713(-) A-G intron -    22484847 chr6:17657787(-) A-G intron -    22484847 chr6:17658396(-) A-G intron -    22484847 chr6:17658456(-) A-G intron -    22484847 chr6:17658470(-) A-G intron -    22484847 chr6:17658503(-) A-G intron -    22484847 chr6:17658527(-) A-G intron -    22484847 chr6:17658540(-) A-G intron -    22484847 chr6:17658544(-) A-G intron -    22484847 chr6:17658545(-) A-G intron -    22484847 chr6:17658586(-) A-G intron -    22484847 chr6:17659764(-) A-G intron -    22484847 chr6:17659771(-) A-G intron -    22484847 chr6:17659801(-) A-G intron -    22484847 chr6:17659806(-) A-G intron -    22484847 chr6:17659812(-) A-G intron -    22484847 chr6:17659828(-) G-A intron -    22484847 chr6:17659842(-) A-G intron -    22484847 chr6:17659855(-) A-G intron -    22484847 chr6:17659877(-) A-G intron -    22484847 chr6:17661379(-) A-G intron -    22484847 chr6:17661399(-) A-C intron -    22484847 chr6:17661445(-) A-G intron -    22484847 chr6:17661462(-) A-G intron -    22484847 chr6:17661488(-) A-G intron -    22484847 chr6:17661543(-) A-G intron -    22484847 chr6:17661544(-) A-G intron -    22484847 chr6:17666083(-) A-G intron -    22484847 chr6:17666084(-) A-G intron -    22484847 chr6:17666475(-) A-G intron -    22484847 chr6:17666522(-) A-G intron -    22484847 chr6:17666580(-) A-G intron -    22484847 chr6:17666662(-) A-G intron -    22484847 chr6:17666663(-) A-G intron -    22484847 chr6:17667747(-) A-G intron -    22484847 chr6:17667759(-) A-G intron -    22484847 chr6:17667781(-) A-G intron -    22484847 chr6:17668422(-) A-G intron -    22484847 chr6:17668451(-) A-G intron -    22484847 chr6:17668504(-) A-G intron -    22484847 chr6:17668548(-) A-G intron -    22484847 chr6:17668583(-) A-G intron -    22484847 chr6:17668816(-) A-G intron -    22484847 chr6:17668857(-) A-G intron -    22484847 chr6:17668962(-) A-G intron -    22484847 chr6:17668998(-) A-G intron -    22484847 chr6:17669412(-) A-G intron -    22484847 chr6:17671179(-) A-G intron -    22484847 chr6:17671235(-) A-G intron -    22484847 chr6:17672237(-) A-G intron -    22484847 chr6:17673410(-) A-G intron -    22484847 chr6:17674918(-) A-G intron -    22484847 chr6:17686303(-) A-G intron -    22484847 chr6:17686370(-) A-G intron -    22484847 chr6:17686724(-) A-G intron -    22484847 chr6:17686898(-) A-G intron -    22484847 chr6:17689572(-) A-G intron -    22484847 chr6:17689587(-) A-G intron -    22484847 chr6:17689860(-) A-G intron -    22484847 chr6:17689900(-) A-G intron -    22484847 chr6:17690394(-) A-G intron -    22484847 chr6:17691391(-) C-T intron -    22484847 chr6:17692170(-) A-G intron -    22484847 chr6:17692693(-) A-G intron -    22484847 chr6:17692701(-) A-G intron -    22484847 chr6:17696051(-) A-G intron -    22484847 chr6:17702839(-) T-C intron -    22484847 chr6:17705165(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NUP153	chr6:17616011-17616012(-) m6A 3'UTR       24284625//27773535//22608085 chr6:17616127-17616128(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr6:17616220-17616221(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr6:17616350-17616351(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr6:17616377-17616378(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr6:17616877-17616878(-) m6A CDS       24284625 chr6:17624981-17624982(-) m6A CDS       27773535 chr6:17624995-17624996(-) m6A CDS       27773535 chr6:17625038-17625039(-) m6A CDS       27773535 chr6:17625043-17625044(-) m6A CDS       27773535 chr6:17626162-17626163(-) m6A CDS       24284625//27773535 chr6:17626252-17626253(-) m6A CDS       24284625//24981863//27773535 chr6:17626358-17626359(-) m6A CDS       24284625 chr6:17629008-17629009(-) m6A CDS       24981863//27371828 chr6:17629111-17629112(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085 chr6:17629122-17629123(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085 chr6:17629230-17629231(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr6:17629266-17629267(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr6:17629275-17629276(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17629298-17629299(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17629390-17629391(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17629411-17629412(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17629477-17629478(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr6:17629567-17629568(-) m6A CDS       24284625//24981863//26404942//22608085 chr6:17629598-17629599(-) m6A CDS       24284625//24981863//26404942//22608085 chr6:17629680-17629681(-) m6A CDS       24284625//24981863//26404942//27371828//22608085 chr6:17629742-17629743(-) m6A CDS       24284625//24981863//26404942//27371828//22608085 chr6:17632939-17632940(-) m6A CDS       24284625 chr6:17632972-17632973(-) m6A CDS       24284625 chr6:17632989-17632990(-) m6A CDS       24284625 chr6:17637387-17637388(-) m6A CDS       24284625//27773535 chr6:17637418-17637419(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr6:17637542-17637543(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637593-17637594(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637600-17637601(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637608-17637609(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637639-17637640(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637687-17637688(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637697-17637698(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637710-17637711(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637731-17637732(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637752-17637753(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637764-17637765(-) m6A CDS       25456834//24981863//27371828 chr6:17637768-17637769(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637823-17637824(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr6:17637835-17637836(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr6:17637930-17637931(-) m6A CDS       24284625//24209618//27773535 chr6:17649397-17649398(-) m6A CDS       24981863//26404942//27773535 chr6:17688709-17688710(-) m6A CDS       24981863//26404942//27773535 chr6:17688748-17688749(-) m6A CDS       24981863//27773535 chr6:17706723-17706724(-) m6A 5'UTR       - chr6:17706736-17706737(-) m6A 5'UTR       - chr6:17706853-17706854(-) m6A 5'UTR       - chr6:17706895-17706896(-) m6A 5'UTR       - chr6:17706910-17706911(-) Gm 5'UTR       - chr6:17706933-17706934(-) m6A 5'UTR       - chr6:17706978-17706979(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NUP153	Chromatin HCC cell line (HepG2)|K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART18-5p
Interactor2: NUP153

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.