Basic Information:

  VIRBase ID:  

VHID00374776

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART18-5p:  MIMAT0003717          SRSF3:  NR_036610     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART18-5p	SRSF3
miRBase Accession/Entrez ID	MIMAT0003717	6428
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SFRS3//SRp20

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SRSF3	chr6:36563776(+) A-I      intronic chr6:36565707(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SRSF3	chr6:36564896(+) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SRSF3	chr6:36562205-36562206(+) m6A 5'UTR//exon       24284625//25456834//24981863//27773535 chr6:36564564-36564565(+) m6A CDS//exon       27773535 chr6:36564594-36564595(+) m6A CDS//exon       27773535 chr6:36564640-36564641(+) m6A CDS//exon       22575960 chr6:36564669-36564670(+) m6A CDS//exon       22575960 chr6:36564735-36564736(+) Tm CDS//exon       - chr6:36566655-36566656(+) m6A 3'UTR//CDS//exon       22575960 chr6:36567974-36567975(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535 chr6:36569769-36569770(+) m6A 3'UTR//exon       27773535 chr6:36569849-36569850(+) m6A 3'UTR//exon       27773535 chr6:36569911-36569912(+) m6A 3'UTR//exon       27773535 chr6:36570024-36570025(+) m6A 3'UTR//exon       27773535 chr6:36570042-36570043(+) m6A 3'UTR//exon       27773535 chr6:36570053-36570054(+) m6A 3'UTR//exon       27773535 chr6:36570061-36570062(+) m6A 3'UTR//exon       27773535 chr6:36570178-36570179(+) m6A 3'UTR//exon       26404942 chr6:36570195-36570196(+) m6A 3'UTR//exon       26404942 chr6:36570206-36570207(+) m6A 3'UTR//exon       26404942 chr6:36570943-36570944(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SRSF3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART18-5p
Interactor2: SRSF3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg