Detail Information

Basic Information:


  VIRBase ID:  

VHID00374248

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART18-5p:           CLK1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART18-5p CLK1
miRBase
Accession/Entrez ID		 MIMAT0003717 1195
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CLK//CLK/STY//STY

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLK1
chr2:201720864(-) A-I      intronic
chr2:201720918(-) A-I      intronic
chr2:201720990(-) A-I      intronic
chr2:201721100(-) A-I      intronic
chr2:201718448(-) A-I      intronic
chr2:201721019(-) A-I      intronic
chr2:201718470(-) A-I      intronic
chr2:201721060(-) A-I      intronic
chr2:201721057(-) A-I      intronic
chr2:201721044(-) A-I      intronic
chr2:201720988(-) A-I      intronic
chr2:201720848(-) A-I      intronic
chr2:201720694(-) A-I      intronic
chr2:201720632(-) A-I      intronic
chr2:201720623(-) A-I      intronic
chr2:201720551(-) A-I      intronic
chr2:201720473(-) A-I      intronic
chr2:201720224(-) A-I      intronic
chr2:201721072(-) A-I      intronic
chr2:201720861(-) A-I      intronic
chr2:201720964(-) A-I      intronic
chr2:201721066(-) A-I      intronic
chr2:201720972(-) A-I      intronic
chr2:201720564(-) A-I      intronic
chr2:201720971(-) A-I      intronic
chr2:201720475(-) A-I      intronic
chr2:201719982(-) A-I      intronic
chr2:201720872(-) A-I      intronic
chr2:201720645(-) A-I      intronic
chr2:201720649(-) A-I      intronic
chr2:201720902(-) A-I      intronic
chr2:201720868(-) A-I      intronic
chr2:201720584(-) A-I      intronic
chr2:201720120(-) A-I      intronic
chr2:201720935(-) A-I      intronic
chr2:201720226(-) A-I      intronic
chr2:201719987(-) A-I      intronic
chr2:201720575(-) A-I      intronic
chr2:201720706(-) A-I      intronic
chr2:201720965(-) A-I      intronic
chr2:201720467(-) A-I      intronic
chr2:201721013(-) A-I      intronic
chr2:201719954(-) A-I      intronic
chr2:201718487(-) A-I      intronic
chr2:201720905(-) A-I      intronic
chr2:201720488(-) A-I      intronic
chr2:201721043(-) A-I      intronic
chr2:201720961(-) A-I      intronic
chr2:201720685(-) A-I      intronic
chr2:201720926(-) A-I      intronic
chr2:201720932(-) A-I      intronic
chr2:201720922(-) A-I      intronic
chr2:201720163(-) A-I      intronic
chr2:201720520(-) A-I      intronic
chr2:201721116(-) A-I      intronic
chr2:201720863(-) A-I      intronic
chr2:201720540(-) A-I      intronic
chr2:201721117(-) A-I      intronic
chr2:201720968(-) A-I      intronic
chr2:201728025(-) A-I      intronic
chr2:201720962(-) A-I      intronic
chr2:201720548(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLK1
chr2:201720475(-) A-I intron -    21960545   //22327324
chr2:201721117(-) A-I intron -    21960545
chr2:201719987(-) A-G intron -    22484847
chr2:201720111(-) A-G intron -    22484847
chr2:201720475(-) A-G intron -    22484847
chr2:201720548(-) A-G intron -    22484847
chr2:201720645(-) A-G intron -    22484847
chr2:201720649(-) A-G intron -    22484847
chr2:201720685(-) A-G intron -    22484847
chr2:201720935(-) A-G intron -    22484847
chr2:201720958(-) A-G intron -    22484847
chr2:201720961(-) A-G intron -    22484847
chr2:201720962(-) A-G intron -    22484847
chr2:201720964(-) A-G intron -    22484847
chr2:201720971(-) A-G intron -    22484847
chr2:201720977(-) A-G intron -    22484847
chr2:201721035(-) A-G intron -    22484847
chr2:201721065(-) A-G intron -    22484847
chr2:201721066(-) A-G intron -    22484847
chr2:201721116(-) A-G intron -    22484847
chr2:201728306(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLK1
chr2:201717737-201717738(-) m6A 3'UTR       27773535
chr2:201717786-201717787(-) m6A 3'UTR       27773535
chr2:201717861-201717862(-) m6A 3'UTR//exon       27773535
chr2:201717989-201717990(-) m6A 3'UTR//exon       26404942//27773535
chr2:201718015-201718016(-) m6A 3'UTR//exon       26404942//27773535
chr2:201722802-201722803(-) m6A 3'UTR//CDS//exon       27773535
chr2:201722876-201722877(-) m6A 5'UTR//intron       24981863//27773535
chr2:201724916-201724917(-) m6A CDS//exon//intron       24981863
chr2:201726002-201726003(-) m6A CDS//exon       24981863
chr2:201726054-201726055(-) m6A CDS//exon       24981863
chr2:201726075-201726076(-) m6A CDS//exon       24981863
chr2:201726089-201726090(-) m6A CDS//exon       24981863
chr2:201726095-201726096(-) m6A CDS//exon       24981863
chr2:201726216-201726217(-) m6A exon//intron       27773535
chr2:201726463-201726464(-) m6A CDS//exon//intron       24981863//28052920//27773535
chr2:201726566-201726567(-) m6A CDS//exon//intron       24209618//24981863//27773535
chr2:201726579-201726580(-) m6A CDS//exon//intron       24209618//24981863//27773535
chr2:201729264-201729265(-) m6A 5'UTR//intron       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLK1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART18-5p
Interactor2: CLK1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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