Basic Information:

  VIRBase ID:  

VHID00373995

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-3p:  MIMAT0003716          SHISA6:  NM_001173462     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-3p	SHISA6
miRBase Accession/Entrez ID	MIMAT0003716	388336
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SHISA6	chr17:11394631(+) A-I      intronic chr17:11394658(+) A-I      intronic chr17:11394623(+) A-I      intronic chr17:11175332(+) A-I      intronic chr17:11175289(+) A-I      intronic chr17:11175245(+) A-I      intronic chr17:11428688(+) A-I      intronic chr17:11428674(+) A-I      intronic chr17:11394630(+) A-I      intronic chr17:11394624(+) A-I      intronic chr17:11219944(+) A-I      intronic chr17:11364531(+) A-I      intronic chr17:11366180(+) A-I      intronic chr17:11219812(+) A-I      intronic chr17:11428696(+) A-I      intronic chr17:11427309(+) A-I      intronic chr17:11427307(+) A-I      intronic chr17:11372217(+) A-I      intronic chr17:11428702(+) A-I      intronic chr17:11428697(+) A-I      intronic chr17:11438169(+) A-I      intronic chr17:11223722(+) A-I      intronic chr17:11241799(+) A-I      intronic chr17:11349209(+) A-I      intronic chr17:11353957(+) A-I      intronic chr17:11351962(+) A-I      intronic chr17:11304532(+) A-I      intronic chr17:11363988(+) A-I      intronic chr17:11304533(+) A-I      intronic chr17:11366001(+) A-I      intronic chr17:11289572(+) A-I      intronic chr17:11318256(+) A-I      intronic chr17:11328166(+) A-I      intronic chr17:11302808(+) A-I      intronic chr17:11218040(+) A-I      intronic chr17:11367308(+) A-I      intronic chr17:11353944(+) A-I      intronic chr17:11190863(+) A-I      intronic chr17:11438433(+) A-I      intronic chr17:11384465(+) A-I      intronic chr17:11330635(+) A-I      intronic chr17:11437591(+) A-I      intronic chr17:11190783(+) A-I      intronic chr17:11149660(+) A-I      intronic chr17:11353961(+) A-I      intronic chr17:11304699(+) A-I      intronic chr17:11318355(+) A-I      intronic chr17:11427299(+) A-I      intronic chr17:11308999(+) A-I      intronic chr17:11363970(+) A-I      intronic chr17:11318241(+) A-I      intronic chr17:11190845(+) A-I      intronic chr17:11190868(+) A-I      intronic chr17:11372218(+) A-I      intronic chr17:11384475(+) A-I      intronic chr17:11214209(+) A-I      intronic chr17:11302802(+) A-I      intronic chr17:11384485(+) A-I      intronic chr17:11214036(+) A-I      intronic chr17:11372227(+) A-I      intronic chr17:11217978(+) A-I      intronic chr17:11149655(+) A-I      intronic chr17:11366019(+) A-I      intronic chr17:11189197(+) A-I      intronic chr17:11190904(+) A-I      intronic chr17:11241819(+) A-I      intronic chr17:11362389(+) A-I      intronic chr17:11318238(+) A-I      intronic chr17:11309039(+) A-I      intronic chr17:11230994(+) A-I      intronic chr17:11308998(+) A-I      intronic chr17:11429176(+) A-I      intronic chr17:11175338(+) A-I      intronic chr17:11239258(+) A-I      intronic chr17:11190965(+) A-I      intronic chr17:11427068(+) A-I      intronic chr17:11318217(+) A-I      intronic chr17:11427073(+) A-I      intronic chr17:11330632(+) A-I      intronic chr17:11453571(+) A-I      intronic chr17:11193794(+) A-I      intronic chr17:11425658(+) A-I      intronic chr17:11263730(+) A-I      intronic chr17:11197235(+) A-I      intronic chr17:11328163(+) A-I      intronic chr17:11214114(+) A-I      intronic chr17:11354002(+) A-I      intronic chr17:11362981(+) A-I      intronic chr17:11444671(+) A-I      intronic chr17:11190456(+) A-I      intronic chr17:11318242(+) A-I      intronic chr17:11353962(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHISA6	chr17:11282922-11282923(+) m6A 3'UTR//intron       25456834 chr17:11283025-11283026(+) m6A 3'UTR//intron       25456834 chr17:11283036-11283037(+) m6A 3'UTR//intron       25456834 chr17:11283065-11283066(+) m6A 3'UTR//intron       25456834 chr17:11283097-11283098(+) m6A 3'UTR//intron       25456834 chr17:11283119-11283120(+) m6A 3'UTR//intron       25456834 chr17:11461331-11461332(+) m6A CDS       25456834 chr17:11461427-11461428(+) m6A CDS       25456834 chr17:11461539-11461540(+) m6A CDS       25456834//24981863 chr17:11461603-11461604(+) m6A CDS       25456834 chr17:11461953-11461954(+) m6A 3'UTR       25456834 chr17:11461982-11461983(+) m6A 3'UTR       25456834 chr17:11462283-11462284(+) m6A 3'UTR       25456834 chr17:11466307-11466308(+) m6A 3'UTR       25456834 chr17:11466317-11466318(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHISA6	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-3p
Interactor2: SHISA6

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg