Basic Information:

  VIRBase ID:  

VHID00371563

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-3p:  MIMAT0003716          GLB1:  NM_000404     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-3p	GLB1
miRBase Accession/Entrez ID	MIMAT0003716	2720
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EBP//ELNR1//MPS4B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GLB1	chr3:33073460(-) A-I      intronic chr3:33073459(-) A-I      intronic chr3:33073454(-) A-I      intronic chr3:33069517(-) A-I      intronic chr3:33042027(-) A-I      intronic chr3:33042015(-) A-I      intronic chr3:33042002(-) A-I      intronic chr3:33042001(-) A-I      intronic chr3:33041356(-) A-I      intronic chr3:33041338(-) A-I      intronic chr3:33041318(-) A-I      intronic chr3:33041316(-) A-I      intronic chr3:33041310(-) A-I      intronic chr3:33082942(-) A-I      intronic chr3:33082937(-) A-I      intronic chr3:33078614(-) A-I      intronic chr3:33074171(-) A-I      intronic chr3:33074158(-) A-I      intronic chr3:33073562(-) A-I      intronic chr3:33073527(-) A-I      intronic chr3:33073517(-) A-I      intronic chr3:33073503(-) A-I      intronic chr3:33073493(-) A-I      intronic chr3:33073483(-) A-I      intronic chr3:33073422(-) A-I      intronic chr3:33073418(-) A-I      intronic chr3:33073405(-) A-I      intronic chr3:33069599(-) A-I      intronic chr3:33069595(-) A-I      intronic chr3:33069567(-) A-I      intronic chr3:33069564(-) A-I      intronic chr3:33069563(-) A-I      intronic chr3:33069561(-) A-I      intronic chr3:33069557(-) A-I      intronic chr3:33069533(-) A-I      intronic chr3:33069531(-) A-I      intronic chr3:33069521(-) A-I      intronic chr3:33057977(-) A-I      intronic chr3:33057973(-) A-I      intronic chr3:33053101(-) A-I      intronic chr3:33052513(-) A-I      intronic chr3:33045398(-) A-I      intronic chr3:33045305(-) A-I      intronic chr3:33045278(-) A-I      intronic chr3:33044128(-) A-I      intronic chr3:33043998(-) A-I      intronic chr3:33043984(-) A-I      intronic chr3:33042167(-) A-I      intronic chr3:33042162(-) A-I      intronic chr3:33042156(-) A-I      intronic chr3:33042119(-) A-I      intronic chr3:33042097(-) A-I      intronic chr3:33042039(-) A-I      intronic chr3:33042034(-) A-I      intronic chr3:33041609(-) A-I      intronic chr3:33041344(-) A-I      intronic chr3:33041331(-) A-I      intronic chr3:33039888(-) A-I      intronic chr3:33039872(-) A-I      intronic chr3:33088840(-) A-I      intronic chr3:33052794(-) A-I      intronic chr3:33052797(-) A-I      intronic chr3:33052798(-) A-I      intronic chr3:33052806(-) A-I      intronic chr3:33052809(-) A-I      intronic chr3:33078706(-) A-I      intronic chr3:33078705(-) A-I      intronic chr3:33078702(-) A-I      intronic chr3:33078605(-) A-I      intronic chr3:33076842(-) A-I      intronic chr3:33076802(-) A-I      intronic chr3:33041375(-) A-I      intronic chr3:33041339(-) A-I      intronic chr3:33075390(-) A-I      intronic chr3:33075396(-) A-I      intronic chr3:33075401(-) A-I      intronic chr3:33075405(-) A-I      intronic chr3:33075408(-) A-I      intronic chr3:33128993(-) A-I      intronic chr3:33128979(-) A-I      intronic chr3:33128896(-) A-I      intronic chr3:33128805(-) A-I      intronic chr3:33121866(-) A-I      intronic chr3:33121754(-) A-I      intronic chr3:33121749(-) A-I      intronic chr3:33110831(-) A-I      intronic chr3:33110679(-) A-I      intronic chr3:33110665(-) A-I      intronic chr3:33109502(-) A-I      intronic chr3:33109022(-) A-I      intronic chr3:33104217(-) A-I      intronic chr3:33104171(-) A-I      intronic chr3:33104170(-) A-I      intronic chr3:33104117(-) A-I      intronic chr3:33103932(-) A-I      intronic chr3:33097936(-) A-I      intronic chr3:33084126(-) A-I      intronic chr3:33084088(-) A-I      intronic chr3:33084060(-) A-I      intronic chr3:33084040(-) A-I      intronic chr3:33084030(-) A-I      intronic chr3:33084024(-) A-I      intronic chr3:33084016(-) A-I      intronic chr3:33084014(-) A-I      intronic chr3:33083988(-) A-I      intronic chr3:33083881(-) A-I      intronic chr3:33083072(-) A-I      intronic chr3:33083071(-) A-I      intronic chr3:33083046(-) A-I      intronic chr3:33083042(-) A-I      intronic chr3:33083006(-) A-I      intronic chr3:33083005(-) A-I      intronic chr3:33073508(-) A-I      intronic chr3:33073494(-) A-I      intronic chr3:33052756(-) A-I      intronic chr3:33041705(-) A-I      intronic chr3:33073563(-) A-I      intronic chr3:33047134(-) A-I      intronic chr3:33083078(-) A-I      intronic chr3:33042095(-) A-I      intronic chr3:33128787(-) A-I      intronic chr3:33073401(-) A-I      intronic chr3:33058009(-) A-I      intronic chr3:33041570(-) A-I      intronic chr3:33041271(-) A-I      intronic chr3:33093021(-) A-I      intronic chr3:33119650(-) A-I      intronic chr3:33069604(-) A-I      intronic chr3:33075109(-) A-I      intronic chr3:33041325(-) A-I      intronic chr3:33078634(-) A-I      intronic chr3:33041311(-) A-I      intronic chr3:33120451(-) A-I      intronic chr3:33073436(-) A-I      intronic chr3:33073027(-) A-I      intronic chr3:33083139(-) A-I      intronic chr3:33041974(-) A-I      intronic chr3:33083097(-) A-I      intronic chr3:33045495(-) A-I      intronic chr3:33041251(-) A-I      intronic chr3:33058013(-) A-I      intronic chr3:33072891(-) A-I      intronic chr3:33044025(-) A-I      intronic chr3:33121789(-) A-I      intronic chr3:33039917(-) A-I      intronic chr3:33070336(-) A-I      intronic chr3:33120450(-) A-I      intronic chr3:33073571(-) A-I      intronic chr3:33073428(-) A-I      intronic chr3:33052383(-) A-I      intronic chr3:33093014(-) A-I      intronic chr3:33104156(-) A-I      intronic chr3:33041647(-) A-I      intronic chr3:33069495(-) A-I      intronic chr3:33057993(-) A-I      intronic chr3:33073036(-) A-I      intronic chr3:33076775(-) A-I      intronic chr3:33056423(-) A-I      intronic chr3:33041370(-) A-I      intronic chr3:33073067(-) A-I      intronic chr3:33052568(-) A-I      intronic chr3:33097656(-) A-I      intronic chr3:33091113(-) A-I      intronic chr3:33104197(-) A-I      intronic chr3:33074099(-) A-I      intronic chr3:33098044(-) A-I      intronic chr3:33072973(-) A-I      intronic chr3:33127360(-) A-I      intronic chr3:33074138(-) A-I      intronic chr3:33078775(-) A-I      intronic chr3:33041264(-) A-I      intronic chr3:33043958(-) A-I      intronic chr3:33082897(-) A-I      intronic chr3:33108571(-) A-I      intronic chr3:33120432(-) A-I      intronic chr3:33039755(-) A-I      intronic chr3:33041299(-) A-I      intronic chr3:33058123(-) A-I      intronic chr3:33092603(-) A-I      intronic chr3:33044074(-) A-I      intronic chr3:33072970(-) A-I      intronic chr3:33080616(-) A-I      intronic chr3:33041612(-) A-I      intronic chr3:33078675(-) A-I      intronic chr3:33041723(-) A-I      intronic chr3:33073478(-) A-I      intronic chr3:33121693(-) A-I      intronic chr3:33056640(-) A-I      intronic chr3:33047114(-) A-I      intronic chr3:33074166(-) A-I      intronic chr3:33042830(-) A-I      intronic chr3:33041608(-) A-I      intronic chr3:33041644(-) A-I      intronic chr3:33084131(-) A-I      intronic chr3:33073317(-) A-I      intronic chr3:33069150(-) A-I      intronic chr3:33104180(-) A-I      intronic chr3:33042056(-) A-I      intronic chr3:33076808(-) A-I      intronic chr3:33052616(-) A-I      intronic chr3:33052486(-) A-I      intronic chr3:33056540(-) A-I      intronic chr3:33069222(-) A-I      intronic chr3:33076706(-) A-I      intronic chr3:33109552(-) A-I      intronic chr3:33041320(-) A-I      intronic chr3:33072968(-) A-I      intronic chr3:33041529(-) A-I      intronic chr3:33075173(-) A-I      intronic chr3:33043948(-) A-I      intronic chr3:33097149(-) A-I      intronic chr3:33058117(-) A-I      intronic chr3:33041248(-) A-I      intronic chr3:33074188(-) A-I      intronic chr3:33074134(-) A-I      intronic chr3:33057883(-) A-I      intronic chr3:33050355(-) A-I      intronic chr3:33084132(-) A-I      intronic chr3:33045277(-) A-I      intronic chr3:33073469(-) A-I      intronic chr3:33041564(-) A-I      intronic chr3:33103859(-) A-I      intronic chr3:33076707(-) A-I      intronic chr3:33076758(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GLB1	chr3:33088956(-) A-G intron -    22484847 chr3:33041608(-) A-G intron -    22484847 chr3:33041613(-) A-G intron -    22484847 chr3:33041723(-) A-G intron -    22484847 chr3:33041728(-) A-G intron -    22484847 chr3:33041974(-) A-G intron -    22484847 chr3:33042095(-) A-G intron -    22484847 chr3:33045277(-) A-G intron -    22484847 chr3:33045390(-) A-G intron -    22484847 chr3:33047134(-) A-G intron -    22484847 chr3:33051021(-) T-A intron -    22484847 chr3:33052383(-) A-G intron -    22484847 chr3:33052445(-) A-G intron -    22484847 chr3:33052486(-) A-G intron -    22484847 chr3:33052616(-) A-G intron -    22484847 chr3:33052756(-) A-G intron -    22484847 chr3:33058123(-) A-G intron -    22484847 chr3:33069150(-) A-G intron -    22484847 chr3:33069222(-) A-G intron -    22484847 chr3:33069227(-) A-G intron -    22484847 chr3:33073036(-) A-G intron -    22484847 chr3:33082919(-) A-G intron -    22484847 chr3:33082971(-) A-G intron -    22484847 chr3:33083045(-) A-G intron -    22484847 chr3:33083054(-) A-G intron -    22484847 chr3:33083078(-) A-G intron -    22484847 chr3:33103859(-) A-G intron -    22484847 chr3:33104168(-) A-G intron -    22484847 chr3:33104180(-) A-G intron -    22484847 chr3:33104197(-) A-G intron -    22484847 chr3:33109552(-) A-G intron -    22484847 chr3:33119714(-) A-G intron -    22484847 chr3:33121789(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GLB1	chr3:33038137-33038138(-) m6A 3'UTR       27773535 chr3:33038156-33038157(-) m6A 3'UTR       27773535 chr3:33038364-33038365(-) m6A 3'UTR       24284625//27773535 chr3:33038498-33038499(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038546-33038547(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038564-33038565(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038590-33038591(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038605-33038606(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038651-33038652(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:33038674-33038675(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:33038710-33038711(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:33038729-33038730(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:33055552-33055553(-) m6A CDS       22575960 chr3:33055578-33055579(-) m6A CDS//exon       22575960 chr3:33055590-33055591(-) m6A CDS//exon       27773535//22575960 chr3:33055617-33055618(-) m6A CDS//exon       27773535 chr3:33055697-33055698(-) m6A CDS//exon       24284625//27773535 chr3:33055737-33055738(-) m6A CDS//exon       24284625//27773535 chr3:33055758-33055759(-) m6A CDS//exon       24284625//27773535 chr3:33055767-33055768(-) Y CDS//exon       25219674 chr3:33058217-33058218(-) Y CDS//exon       26075521 chr3:33058228-33058229(-) m6A CDS//exon       27773535 chr3:33058243-33058244(-) m6A CDS//exon       27773535 chr3:33071792-33071793(-) Gm intron       16381836 chr3:33094250-33094251(-) m6A exon//intron       - chr3:33094988-33094989(-) m6A 3'UTR//CDS//exon       - chr3:33099583-33099584(-) m6A 3'UTR//CDS//intron       - chr3:33099591-33099592(-) m6A 3'UTR//CDS//intron       - chr3:33099637-33099638(-) m6A 3'UTR//CDS//intron       - chr3:33118647-33118648(-) m6A 5'UTR//CDS//intron       - chr3:33134039-33134040(-) m6A intron       24284625//24981863//27773535 chr3:33134185-33134186(-) m6A intron       24284625//24209618//24981863//27773535//22608085 chr3:33134324-33134325(-) m6A intron       24284625//24209618//24981863//22608085 chr3:33134605-33134606(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33134668-33134669(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33134707-33134708(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33134971-33134972(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33134976-33134977(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33135017-33135018(-) m6A intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33135046-33135047(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33135073-33135074(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:33135113-33135114(-) m6A intron       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr3:33135212-33135213(-) m6A intron       24284625//25456834//24981863//27371828//22575960//22608085 chr3:33135718-33135719(-) m6A intron       24284625 chr3:33135746-33135747(-) m6A intron       24284625//27773535//27371828 chr3:33135777-33135778(-) m6A intron       24284625//27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GLB1	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-3p
Interactor2: GLB1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg