Basic Information:

  VIRBase ID:  

VHID00371443

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-3p:  MIMAT0003716          VCAN:  NM_001164097     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-3p	VCAN
miRBase Accession/Entrez ID	MIMAT0003716	1462
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CSPG2//ERVR//GHAP//PG-M//WGN//WGN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VCAN	chr5:82811874(+) A-I      intronic chr5:82811866(+) A-I      intronic chr5:82811864(+) A-I      intronic chr5:82810487(+) A-I      intronic chr5:82810478(+) A-I      intronic chr5:82810350(+) A-I      intronic chr5:82806883(+) A-I      intronic chr5:82810344(+) A-I      intronic chr5:82810461(+) A-I      intronic chr5:82811904(+) A-I      intronic chr5:82810424(+) A-I      intronic chr5:82806749(+) A-I      intronic chr5:82812090(+) A-I      intronic chr5:82828473(+) A-I      intronic chr5:82810397(+) A-I      intronic chr5:82790712(+) A-I      intronic chr5:82811797(+) A-I      intronic chr5:82811796(+) A-I      intronic chr5:82810334(+) A-I      intronic chr5:82810326(+) A-I      intronic chr5:82812053(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VCAN	chr5:82810339(+) A-I intron -    21960545 chr5:82810326(+) A-G intron -    22484847 chr5:82810334(+) A-G intron -    22484847 chr5:82810339(+) A-G intron -    22484847 chr5:82811904(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VCAN	chr5:82767421-82767422(+) m6A 5'UTR       25456834 chr5:82767471-82767472(+) m6A 5'UTR//exon       24981863 chr5:82767570-82767571(+) m6A 5'UTR//exon       24981863//22608085 chr5:82767608-82767609(+) m6A 5'UTR//exon       24981863//26404942//22608085 chr5:82767638-82767639(+) m6A 5'UTR//exon       24981863//26404942//22608085 chr5:82767654-82767655(+) m6A 5'UTR//exon       24981863//22608085 chr5:82767666-82767667(+) m6A 5'UTR//exon       24981863//22608085 chr5:82767781-82767782(+) m6A 5'UTR//exon       24981863 chr5:82767819-82767820(+) m6A 5'UTR//exon       24981863 chr5:82786060-82786061(+) m6A CDS       24981863//26404942//22608085 chr5:82786086-82786087(+) m6A CDS       24981863//26404942//22608085 chr5:82786132-82786133(+) m6A CDS       24981863//26404942//22608085 chr5:82808018-82808019(+) m6A CDS//exon       25456834//24981863//22608085 chr5:82808142-82808143(+) m6A CDS//exon       25456834//24981863//22608085 chr5:82808161-82808162(+) m6A CDS//exon       25456834//24981863//22608085 chr5:82808166-82808167(+) m6A CDS//exon       25456834//24981863//22608085 chr5:82815208-82815209(+) m6A CDS//intron       24981863//22608085 chr5:82815234-82815235(+) m6A CDS//intron       24981863//22608085 chr5:82815256-82815257(+) m6A CDS//intron       24981863//22608085 chr5:82815339-82815340(+) m6A CDS//intron       24981863//22608085 chr5:82815459-82815460(+) m6A CDS//intron       24981863//22608085 chr5:82815476-82815477(+) m6A CDS//intron       24981863//22608085 chr5:82815567-82815568(+) m6A CDS//intron       24981863//22608085 chr5:82815597-82815598(+) m6A CDS//intron       24981863//22608085 chr5:82815676-82815677(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82815715-82815716(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82815800-82815801(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82815805-82815806(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82815877-82815878(+) m6A CDS//intron       24981863//22608085 chr5:82815887-82815888(+) m6A CDS//intron       24981863//22608085 chr5:82815911-82815912(+) m6A CDS//intron       24981863//22608085 chr5:82815999-82816000(+) m6A CDS//intron       24981863//22608085 chr5:82816156-82816157(+) m6A CDS//intron       24981863//22608085 chr5:82816183-82816184(+) m6A CDS//intron       24981863//22608085 chr5:82816189-82816190(+) m6A CDS//intron       24981863//22608085 chr5:82816210-82816211(+) m6A CDS//intron       24981863//22608085 chr5:82816270-82816271(+) m6A CDS//intron       24981863//22608085 chr5:82816299-82816300(+) m6A CDS//intron       24981863//22608085 chr5:82816430-82816431(+) m6A CDS//intron       24981863//22608085 chr5:82816581-82816582(+) m6A CDS//intron       24981863//22608085 chr5:82816649-82816650(+) m6A CDS//intron       24981863//22608085 chr5:82816739-82816740(+) m6A CDS//intron       24981863 chr5:82816919-82816920(+) m6A CDS//intron       24981863//22608085 chr5:82817027-82817028(+) m6A CDS//intron       24981863//22608085 chr5:82817065-82817066(+) m6A CDS//intron       24981863//22608085 chr5:82817121-82817122(+) m6A CDS//intron       24981863//22608085 chr5:82817132-82817133(+) m6A CDS//intron       24981863//22608085 chr5:82817152-82817153(+) m6A CDS//intron       24981863//22608085 chr5:82817182-82817183(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817191-82817192(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817212-82817213(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817241-82817242(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817256-82817257(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817287-82817288(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817319-82817320(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817398-82817399(+) m6A CDS//intron       24981863//22608085 chr5:82817470-82817471(+) m6A CDS//intron       24981863//22608085 chr5:82817535-82817536(+) m6A CDS//intron       24981863//22608085 chr5:82817548-82817549(+) m6A CDS//intron       24981863//22608085 chr5:82817626-82817627(+) m6A CDS//intron       24981863//26404942//22608085 chr5:82817641-82817642(+) m6A CDS//intron       24981863//26404942//22608085 chr5:82817700-82817701(+) m6A CDS//intron       24981863//22608085 chr5:82817768-82817769(+) m6A CDS//intron       24981863//22608085 chr5:82817820-82817821(+) m6A CDS//intron       24981863//22608085 chr5:82817841-82817842(+) m6A CDS//intron       24981863//22608085 chr5:82817854-82817855(+) m6A CDS//intron       24981863//22608085 chr5:82817935-82817936(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82817941-82817942(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82818000-82818001(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82818017-82818018(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82818033-82818034(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82818124-82818125(+) m6A CDS//intron       25456834//24981863//22608085 chr5:82831440-82831441(+) m6A exon//intron       25456834//24981863//22608085 chr5:82831501-82831502(+) m6A exon//intron       24981863 chr5:82832809-82832810(+) m6A exon//intron       24981863//22608085 chr5:82832886-82832887(+) m6A CDS//exon//intron       24981863//22608085 chr5:82832902-82832903(+) m6A CDS//exon//intron       24981863//22608085 chr5:82832966-82832967(+) m6A CDS//exon//intron       24981863//22608085 chr5:82833089-82833090(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82833155-82833156(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82833238-82833239(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82833274-82833275(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82833286-82833287(+) m6A CDS//exon//intron       25456834//24981863//26404942//27773535//22608085 chr5:82833294-82833295(+) m6A CDS//exon//intron       25456834//24981863//26404942//27773535//22608085 chr5:82833361-82833362(+) m6A CDS//exon//intron       25456834//24981863//26404942//27773535//22608085 chr5:82833426-82833427(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82833435-82833436(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82833696-82833697(+) m6A CDS//exon//intron       22608085 chr5:82833836-82833837(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82833903-82833904(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82833946-82833947(+) m6A CDS//exon//intron       26404942//27773535//22608085 chr5:82834012-82834013(+) m6A CDS//exon//intron       26404942//27773535//22608085 chr5:82834357-82834358(+) m6A CDS//exon//intron       22608085 chr5:82834447-82834448(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82834473-82834474(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82834496-82834497(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82834525-82834526(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82834563-82834564(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82834718-82834719(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82834726-82834727(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82834785-82834786(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82835081-82835082(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835092-82835093(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835142-82835143(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835161-82835162(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835175-82835176(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835213-82835214(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835229-82835230(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835251-82835252(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835263-82835264(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835268-82835269(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835275-82835276(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835308-82835309(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835342-82835343(+) m6A CDS//exon//intron       24981863//22608085 chr5:82835478-82835479(+) m6A CDS//exon//intron       24981863//22608085 chr5:82835523-82835524(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835544-82835545(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835586-82835587(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835652-82835653(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82835720-82835721(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82835757-82835758(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82835773-82835774(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835850-82835851(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835882-82835883(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835889-82835890(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835905-82835906(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835932-82835933(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835940-82835941(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835947-82835948(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82835958-82835959(+) m6A CDS//exon//intron       24981863//22608085 chr5:82835963-82835964(+) m6A CDS//exon//intron       24981863//22608085 chr5:82836001-82836002(+) m6A CDS//exon//intron       24981863//22608085 chr5:82836081-82836082(+) m6A CDS//exon//intron       24981863//22608085 chr5:82836102-82836103(+) m6A CDS//exon//intron       24981863//22608085 chr5:82836177-82836178(+) m6A CDS//exon//intron       24981863//22608085 chr5:82836222-82836223(+) m6A CDS//exon//intron       22608085 chr5:82836308-82836309(+) m6A CDS//exon//intron       22608085 chr5:82836386-82836387(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr5:82836400-82836401(+) Y CDS//exon//intron       26075521 chr5:82836420-82836421(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836435-82836436(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836458-82836459(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836464-82836465(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836473-82836474(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836573-82836574(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836587-82836588(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836604-82836605(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836633-82836634(+) m6A CDS//exon//intron       24981863//26404942//27773535//22608085 chr5:82836724-82836725(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82836862-82836863(+) m6A CDS//exon//intron       24981863//22608085 chr5:82837019-82837020(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82837060-82837061(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82837079-82837080(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82837086-82837087(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82837145-82837146(+) m6A CDS//exon//intron       25456834//24981863//26404942//22608085 chr5:82837291-82837292(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837338-82837339(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837452-82837453(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837518-82837519(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837539-82837540(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837578-82837579(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837597-82837598(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837622-82837623(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837627-82837628(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837678-82837679(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837693-82837694(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837813-82837814(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837853-82837854(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837861-82837862(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837911-82837912(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82837961-82837962(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82838014-82838015(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82838026-82838027(+) m6A CDS//exon//intron       24981863//26404942//22608085 chr5:82875978-82875979(+) m6A CDS//exon       24981863//22608085 chr5:82876006-82876007(+) m6A exon//intron       24981863//22608085 chr5:82876031-82876032(+) m6A exon//intron       24981863//22608085 chr5:82876142-82876143(+) m6A CDS//exon       24981863//22608085 chr5:82876185-82876186(+) m6A CDS//exon       24981863//27773535//22608085 chr5:82876207-82876208(+) m6A CDS//exon       24981863//27773535//22608085 chr5:82876268-82876269(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82876360-82876361(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82876398-82876399(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82876431-82876432(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82876438-82876439(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82876764-82876765(+) m6A 3'UTR//exon       25456834//24981863//26404942//22608085 chr5:82876785-82876786(+) m6A 3'UTR//exon       25456834//24981863//26404942//22608085 chr5:82876796-82876797(+) m6A 3'UTR//exon       25456834//24981863//26404942//22608085 chr5:82876889-82876890(+) m6A 3'UTR//exon       25456834//24981863//26404942//27773535//22608085 chr5:82876896-82876897(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22608085 chr5:82876909-82876910(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22608085 chr5:82876964-82876965(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22608085 chr5:82876982-82876983(+) m6A 3'UTR//exon       25456834//24981863//26404942//27773535//22608085 chr5:82877095-82877096(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr5:82877128-82877129(+) m6A 3'UTR//exon       24981863//26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VCAN	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-3p
Interactor2: VCAN

Evidence Support:

Prediction-Evidence	PITA//Targetscan
Support Database	VmiReg