Basic Information:

  VIRBase ID:  

VHID00371417

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-3p:  MIMAT0003716          CLCN4:  NM_001256944     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-3p	CLCN4
miRBase Accession/Entrez ID	MIMAT0003716	1183
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ClC-4//ClC-4A//CLC4//MRX15//MRX49//MRXSRC

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLCN4	chrX:10177501(+) A-I      intronic chrX:10149292(+) A-I      intronic chrX:10149305(+) A-I      intronic chrX:10177475(+) A-I      intronic chrX:10173787(+) A-I      intronic chrX:10173773(+) A-I      intronic chrX:10170264(+) A-I      intronic chrX:10169941(+) A-I      intronic chrX:10169933(+) A-I      intronic chrX:10168926(+) A-I      intronic chrX:10149250(+) A-I      intronic chrX:10179227(+) A-I      intronic chrX:10149253(+) A-I      intronic chrX:10179150(+) A-I      intronic chrX:10170356(+) A-I      intronic chrX:10178795(+) A-I      intronic chrX:10179124(+) A-I      intronic chrX:10170259(+) A-I      intronic chrX:10173921(+) A-I      intronic chrX:10177665(+) A-I      intronic chrX:10173760(+) A-I      intronic chrX:10173696(+) A-I      intronic chrX:10179056(+) A-I      intronic chrX:10178796(+) A-I      intronic chrX:10178782(+) A-I      intronic chrX:10168822(+) A-I      intronic chrX:10168940(+) A-I      intronic chrX:10150546(+) A-I      intronic chrX:10149293(+) A-I      intronic chrX:10170336(+) A-I      intronic chrX:10173392(+) A-I      intronic chrX:10150646(+) A-I      intronic chrX:10179156(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLCN4	chrX:10125071-10125072(+) m6A 5'UTR       24981863 chrX:10153106-10153107(+) m6A CDS//intron       - chrX:10153157-10153158(+) m6A CDS//intron       - chrX:10153196-10153197(+) m6A CDS//intron       - chrX:10153206-10153207(+) m6A CDS//intron       - chrX:10176233-10176234(+) m6A CDS//intron       24284625//24981863 chrX:10176279-10176280(+) m6A CDS//intron       24284625//24981863 chrX:10176324-10176325(+) m6A CDS       24284625//24981863 chrX:10176532-10176533(+) m6A CDS       24284625//24981863 chrX:10188817-10188818(+) m6A CDS       24284625 chrX:10188841-10188842(+) m6A CDS       24284625 chrX:10188881-10188882(+) m6A CDS       24284625 chrX:10201536-10201537(+) m6A CDS       24284625//24981863 chrX:10201572-10201573(+) m6A CDS       24284625//24981863//27773535 chrX:10201592-10201593(+) m6A CDS       24284625//24981863//27773535 chrX:10201598-10201599(+) m6A CDS       24284625//24981863//27773535 chrX:10201652-10201653(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201722-10201723(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201731-10201732(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201769-10201770(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201779-10201780(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201785-10201786(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201791-10201792(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201948-10201949(+) m6A 3'UTR       24284625//24209618//24981863//27773535 chrX:10201991-10201992(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chrX:10202018-10202019(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chrX:10202098-10202099(+) m6A 3'UTR       24284625//24981863 chrX:10202144-10202145(+) m6A 3'UTR       24284625//24981863 chrX:10202245-10202246(+) m6A 3'UTR       24284625//25456834//24981863 chrX:10202302-10202303(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chrX:10202316-10202317(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chrX:10202328-10202329(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chrX:10202376-10202377(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLCN4	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-3p
Interactor2: CLCN4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg