Basic Information:

  VIRBase ID:  

VHID00371112

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          VGLL3:  NM_016206     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	VGLL3
miRBase Accession/Entrez ID	MIMAT0003715	389136
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	VGL-3//VGL3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VGLL3	chr3:87023442(-) A-I      intronic chr3:87023379(-) A-I      intronic chr3:87023439(-) A-I      intronic chr3:87023472(-) A-I      intronic chr3:87023482(-) A-I      intronic chr3:87023392(-) A-I      intronic chr3:87023457(-) A-I      intronic chr3:87004568(-) A-I      intronic chr3:87023432(-) A-I      intronic chr3:87023428(-) A-I      intronic chr3:87023423(-) A-I      intronic chr3:87023364(-) A-I      intronic chr3:87023446(-) A-I      intronic chr3:87023496(-) A-I      intronic chr3:87023365(-) A-I      intronic chr3:87023396(-) A-I      intronic chr3:87023373(-) A-I      intronic chr3:86988583(-) A-I      3'UTR chr3:86988609(-) A-I      3'UTR chr3:87023477(-) A-I      intronic chr3:86993598(-) A-I      3'UTR chr3:87011911(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VGLL3	chr3:86987686-86987687(-) m6A 3'UTR       24981863//22575960//22608085 chr3:86987724-86987725(-) m6A 3'UTR       24981863//22575960//22608085 chr3:86987785-86987786(-) m6A 3'UTR       22575960//22608085 chr3:86987797-86987798(-) m6A 3'UTR       22575960//22608085 chr3:86995998-86995999(-) m6A 3'UTR       24209618//25456834//24981863//26404942//22575960//22608085 chr3:86996059-86996060(-) m6A 3'UTR       24209618//25456834//24981863//26404942//22575960//22608085 chr3:86996083-86996084(-) m6A 3'UTR       24209618//25456834//24981863//26404942//22575960//22608085 chr3:86996171-86996172(-) m6A 3'UTR       24209618//24981863//26404942//22575960//22608085 chr3:86996201-86996202(-) m6A CDS       24209618//24981863//26404942//22575960//22608085 chr3:87017768-87017769(-) m6A CDS       24209618//24981863//22575960 chr3:87017775-87017776(-) m6A CDS       24209618//24981863//22575960 chr3:87017827-87017828(-) m6A CDS       24209618//24981863//22575960 chr3:87017832-87017833(-) m6A CDS       24209618//24981863//22575960 chr3:87018093-87018094(-) m6A CDS       24284625//24209618//24981863//22575960 chr3:87018109-87018110(-) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr3:87018154-87018155(-) m6A CDS       24209618//24981863//22575960 chr3:87018222-87018223(-) m6A CDS       24209618//22575960 chr3:87027766-87027767(-) m6A CDS       24209618//25456834//24981863//22575960 chr3:87027788-87027789(-) m6A CDS       24209618//25456834//24981863//22575960 chr3:87027851-87027852(-) m6A CDS//intron       25456834//24981863//22575960 chr3:87027892-87027893(-) m6A CDS//intron       25456834 chr3:87027920-87027921(-) m6A CDS//intron       22575960 chr3:87040024-87040025(-) m6A 5'UTR       22575960 chr3:87040126-87040127(-) m6A 5'UTR       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VGLL3	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: VGLL3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg