Basic Information:

  VIRBase ID:  

VHID00370910

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          ZNF740:  NM_001004304     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	ZNF740
miRBase Accession/Entrez ID	MIMAT0003715	283337
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Zfp740

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF740	chr12:53577710(+) A-I      intronic chr12:53577697(+) A-I      intronic chr12:53578128(+) A-I      intronic chr12:53578109(+) A-I      intronic chr12:53578073(+) A-I      intronic chr12:53577708(+) A-I      intronic chr12:53577631(+) A-I      intronic chr12:53578230(+) A-I      intronic chr12:53578076(+) A-I      intronic chr12:53578174(+) A-I      intronic chr12:53577686(+) A-I      intronic chr12:53577701(+) A-I      intronic chr12:53578232(+) A-I      intronic chr12:53577566(+) A-I      intronic chr12:53577717(+) A-I      intronic chr12:53577624(+) A-I      intronic chr12:53577558(+) A-I      intronic chr12:53577649(+) A-I      intronic chr12:53578170(+) A-I      intronic chr12:53578163(+) A-I      intronic chr12:53578231(+) A-I      intronic chr12:53577727(+) A-I      intronic chr12:53577622(+) A-I      intronic chr12:53578181(+) A-I      intronic chr12:53577552(+) A-I      intronic chr12:53578162(+) A-I      intronic chr12:53577617(+) A-I      intronic chr12:53578102(+) A-I      intronic chr12:53576786(+) A-I      intronic chr12:53577687(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZNF740	chr12:53577617(+) A-I intron -    22327324 chr12:53577552(+) A-G intron -    22484847 chr12:53577566(+) A-G intron -    22484847 chr12:53577617(+) A-G intron -    22484847 chr12:53577622(+) A-G intron -    22484847 chr12:53577649(+) A-G intron -    22484847 chr12:53577686(+) A-G intron -    22484847 chr12:53577687(+) A-G intron -    22484847 chr12:53577701(+) A-G intron -    22484847 chr12:53577717(+) A-G intron -    22484847 chr12:53577727(+) A-G intron -    22484847 chr12:53578076(+) A-G intron -    22484847 chr12:53578162(+) A-G intron -    22484847 chr12:53578163(+) A-G intron -    22484847 chr12:53578174(+) A-G intron -    22484847 chr12:53578181(+) A-G intron -    22484847 chr12:53578231(+) A-G intron -    22484847 chr12:53578232(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF740	chr12:53574509-53574510(+) m6A 5'UTR//exon       24981863 chr12:53575469-53575470(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:53575507-53575508(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr12:53575513-53575514(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr12:53575521-53575522(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr12:53575538-53575539(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr12:53575578-53575579(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr12:53575600-53575601(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53575620-53575621(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53575643-53575644(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:53575652-53575653(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:53575720-53575721(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:53575728-53575729(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:53575736-53575737(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr12:53579183-53579184(+) m6A CDS//exon       - chr12:53579248-53579249(+) m6A CDS//exon       24981863 chr12:53581313-53581314(+) m6A CDS       24284625 chr12:53581347-53581348(+) m6A CDS       24284625 chr12:53581411-53581412(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:53581467-53581468(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:53581492-53581493(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:53581501-53581502(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:53581522-53581523(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581536-53581537(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581561-53581562(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581620-53581621(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581646-53581647(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581660-53581661(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581666-53581667(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581693-53581694(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:53581788-53581789(+) m6A 3'UTR//intron       24284625//22608085 chr12:53583827-53583828(+) m6A 3'UTR       - chr12:53583847-53583848(+) m6A 3'UTR       - chr12:53583877-53583878(+) m6A 3'UTR       - chr12:53583891-53583892(+) m6A 3'UTR       - chr12:53585263-53585264(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZNF740	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus HCC cell line (HepG2)|K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: ZNF740

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg