Detail Information

Basic Information:


  VIRBase ID:  

VHID00368368

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:           MGAT4A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART17-5p MGAT4A
miRBase
Accession/Entrez ID		 MIMAT0003715 11320
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - GnT-4a//GNT-IV//GNT-IVA

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MGAT4A
chr2:99269223(-) A-I      intronic
chr2:99248526(-) A-I      intronic
chr2:99249344(-) A-I      intronic
chr2:99248527(-) A-I      intronic
chr2:99294089(-) A-I      intronic
chr2:99294098(-) A-I      intronic
chr2:99294104(-) A-I      intronic
chr2:99248491(-) A-I      intronic
chr2:99294109(-) A-I      intronic
chr2:99294129(-) A-I      intronic
chr2:99294083(-) A-I      intronic
chr2:99294084(-) A-I      intronic
chr2:99294134(-) A-I      intronic
chr2:99307695(-) A-I      intronic
chr2:99294030(-) A-I      intronic
chr2:99249351(-) A-I      intronic
chr2:99248532(-) A-I      intronic
chr2:99294027(-) A-I      intronic
chr2:99307682(-) A-I      intronic
chr2:99294048(-) A-I      intronic
chr2:99294054(-) A-I      intronic
chr2:99294072(-) A-I      intronic
chr2:99294093(-) A-I      intronic
chr2:99294111(-) A-I      intronic
chr2:99294183(-) A-I      intronic
chr2:99294459(-) A-I      intronic
chr2:99264727(-) A-I      intronic
chr2:99294467(-) A-I      intronic
chr2:99294499(-) A-I      intronic
chr2:99294508(-) A-I      intronic
chr2:99294553(-) A-I      intronic
chr2:99294571(-) A-I      intronic
chr2:99294609(-) A-I      intronic
chr2:99294624(-) A-I      intronic
chr2:99323467(-) A-I      intronic
chr2:99248357(-) A-I      intronic
chr2:99249278(-) A-I      intronic
chr2:99249383(-) A-I      intronic
chr2:99249390(-) A-I      intronic
chr2:99249393(-) A-I      intronic
chr2:99249398(-) A-I      intronic
chr2:99323596(-) A-I      intronic
chr2:99328212(-) A-I      intronic
chr2:99328318(-) A-I      intronic
chr2:99328343(-) A-I      intronic
chr2:99328351(-) A-I      intronic
chr2:99332507(-) A-I      intronic
chr2:99311036(-) A-I      intronic
chr2:99341507(-) A-I      intronic
chr2:99341524(-) A-I      intronic
chr2:99341532(-) A-I      intronic
chr2:99306051(-) A-I      intronic
chr2:99322966(-) A-I      intronic
chr2:99307681(-) A-I      intronic
chr2:99306094(-) A-I      intronic
chr2:99249401(-) A-I      intronic
chr2:99306089(-) A-I      intronic
chr2:99323499(-) A-I      intronic
chr2:99323496(-) A-I      intronic
chr2:99283104(-) A-I      intronic
chr2:99249416(-) A-I      intronic
chr2:99252638(-) A-I      intronic
chr2:99262955(-) A-I      intronic
chr2:99322185(-) A-I      intronic
chr2:99269251(-) A-I      intronic
chr2:99269250(-) A-I      intronic
chr2:99269248(-) A-I      intronic
chr2:99269247(-) A-I      intronic
chr2:99265490(-) A-I      intronic
chr2:99265476(-) A-I      intronic
chr2:99265003(-) A-I      intronic
chr2:99322960(-) A-I      intronic
chr2:99322217(-) A-I      intronic
chr2:99283120(-) A-I      intronic
chr2:99307820(-) A-I      intronic
chr2:99307792(-) A-I      intronic
chr2:99307725(-) A-I      intronic
chr2:99239400(-) A-I      3'UTR
chr2:99240756(-) A-I      3'UTR
chr2:99240613(-) A-I      3'UTR
chr2:99240533(-) A-I      3'UTR
chr2:99240597(-) A-I      3'UTR
chr2:99294581(-) A-I      intronic
chr2:99249286(-) A-I      intronic
chr2:99249285(-) A-I      intronic
chr2:99296088(-) A-I      intronic
chr2:99331734(-) A-I      intronic
chr2:99310048(-) A-I      intronic
chr2:99243977(-) A-I      intronic
chr2:99249463(-) A-I      intronic
chr2:99261207(-) A-I      intronic
chr2:99322150(-) A-I      intronic
chr2:99248338(-) A-I      intronic
chr2:99294528(-) A-I      intronic
chr2:99294525(-) A-I      intronic
chr2:99329422(-) A-I      intronic
chr2:99312483(-) A-I      intronic
chr2:99329537(-) A-I      intronic
chr2:99311121(-) A-I      intronic
chr2:99310046(-) A-I      intronic
chr2:99329549(-) A-I      intronic
chr2:99310095(-) A-I      intronic
chr2:99310088(-) A-I      intronic
chr2:99310119(-) A-I      intronic
chr2:99249400(-) A-I      intronic
chr2:99329462(-) A-I      intronic
chr2:99312482(-) A-I      intronic
chr2:99240543(-) A-I      3'UTR
chr2:99239395(-) A-I      3'UTR
chr2:99240548(-) A-I      3'UTR
chr2:99240505(-) A-I      3'UTR
chr2:99239396(-) A-I      3'UTR
chr2:99240747(-) A-I      3'UTR
chr2:99239475(-) A-I      3'UTR
chr2:99239373(-) A-I      3'UTR
chr2:99239382(-) A-I      3'UTR
chr2:99252728(-) A-I      intronic
chr2:99294435(-) A-I      intronic
chr2:99311608(-) A-I      intronic
chr2:99322931(-) A-I      intronic
chr2:99326965(-) A-I      intronic
chr2:99294503(-) A-I      intronic
chr2:99249510(-) A-I      intronic
chr2:99249399(-) A-I      intronic
chr2:99249472(-) A-I      intronic
chr2:99269338(-) A-I      intronic
chr2:99323066(-) A-I      intronic
chr2:99249347(-) A-I      intronic
chr2:99296048(-) A-I      intronic
chr2:99323620(-) A-I      intronic
chr2:99308862(-) A-I      intronic
chr2:99262910(-) A-I      intronic
chr2:99308721(-) A-I      intronic
chr2:99311250(-) A-I      intronic
chr2:99330616(-) A-I      intronic
chr2:99248451(-) A-I      intronic
chr2:99322933(-) A-I      intronic
chr2:99327157(-) A-I      intronic
chr2:99307827(-) A-I      intronic
chr2:99324703(-) A-I      intronic
chr2:99294080(-) A-I      intronic
chr2:99294119(-) A-I      intronic
chr2:99256907(-) A-I      intronic
chr2:99331697(-) A-I      intronic
chr2:99264071(-) A-I      intronic
chr2:99331737(-) A-I      intronic
chr2:99262954(-) A-I      intronic
chr2:99249405(-) A-I      intronic
chr2:99299469(-) A-I      intronic
chr2:99263943(-) A-I      intronic
chr2:99329404(-) A-I      intronic
chr2:99248339(-) A-I      intronic
chr2:99264055(-) A-I      intronic
chr2:99249290(-) A-I      intronic
chr2:99323625(-) A-I      intronic
chr2:99294158(-) A-I      intronic
chr2:99294195(-) A-I      intronic
chr2:99323081(-) A-I      intronic
chr2:99322921(-) A-I      intronic
chr2:99294110(-) A-I      intronic
chr2:99310085(-) A-I      intronic
chr2:99269217(-) A-I      intronic
chr2:99329459(-) A-I      intronic
chr2:99249493(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MGAT4A
chr2:99294503(-) A-I intron -    15258596
chr2:99294525(-) A-I intron -    15258596
chr2:99294528(-) A-I intron -    15258596
chr2:99294531(-) A-I intron -    15258596
chr2:99294581(-) A-I intron -    15258596
chr2:99310046(-) A-I intron -    22028664
chr2:99310048(-) A-I intron -    22028664
chr2:99310088(-) A-I intron -    22028664
chr2:99310095(-) A-I intron -    22028664
chr2:99310119(-) A-I intron -    22028664
chr2:99263048(-) A-I intron -    21960545
chr2:99239382(-) A-G exon 3'UTR    22484847
chr2:99249361(-) A-G intron -    22484847
chr2:99249400(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MGAT4A
chr2:99237251-99237252(-) m6A 3'UTR       27773535
chr2:99237309-99237310(-) m6A 3'UTR       27773535
chr2:99237315-99237316(-) m6A 3'UTR       27773535//27371828
chr2:99237329-99237330(-) m6A 3'UTR       27773535//27371828
chr2:99237343-99237344(-) m6A 3'UTR       27773535//27371828
chr2:99237442-99237443(-) m6A 3'UTR       27773535
chr2:99237633-99237634(-) m6A 3'UTR       24981863//27773535//27371828//22608085
chr2:99237649-99237650(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr2:99237669-99237670(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr2:99237683-99237684(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr2:99237721-99237722(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99237787-99237788(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99237810-99237811(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99237917-99237918(-) m6A 3'UTR//CDS       25456834//26404942//27773535//27371828//22608085
chr2:99237930-99237931(-) m6A 3'UTR//CDS       25456834//26404942//27773535//27371828//22608085
chr2:99238011-99238012(-) m6A 3'UTR//intron       27773535//22608085
chr2:99238056-99238057(-) m6A 3'UTR//intron       27773535//22608085
chr2:99238189-99238190(-) m6A 3'UTR//intron       27773535//22608085
chr2:99238204-99238205(-) m6A 3'UTR//intron       27773535//22608085
chr2:99238295-99238296(-) m6A 3'UTR//intron       27773535
chr2:99240842-99240843(-) m6A 3'UTR//intron       27773535
chr2:99240874-99240875(-) m6A 3'UTR//intron       27773535
chr2:99240894-99240895(-) m6A 3'UTR//intron       27773535
chr2:99240922-99240923(-) m6A 3'UTR//intron       27773535
chr2:99241651-99241652(-) m6A 3'UTR//intron       27773535
chr2:99241714-99241715(-) m6A 3'UTR//intron       27773535
chr2:99291503-99291504(-) m6A CDS//exon       27773535
chr2:99291575-99291576(-) Y CDS//exon       26075521
chr2:99294802-99294803(-) m6A CDS//exon       27773535
chr2:99294872-99294873(-) m6A CDS//exon       27773535
chr2:99294929-99294930(-) m6A CDS//exon       27773535
chr2:99342415-99342416(-) m6A 3'UTR//intron       27773535
chr2:99342437-99342438(-) m6A 3'UTR//intron       27773535
chr2:99342470-99342471(-) m6A 3'UTR//intron       27773535
chr2:99342536-99342537(-) m6A 3'UTR//intron       27773535
chr2:99342543-99342544(-) m6A 3'UTR//intron       27773535
chr2:99342556-99342557(-) m6A 3'UTR//intron       27773535
chr2:99342776-99342777(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99342816-99342817(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99342824-99342825(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99342849-99342850(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:99342922-99342923(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr2:99342965-99342966(-) m6A 5'UTR//exon       24209618//24981863//27773535//27371828//27773536//22608085
chr2:99342996-99342997(-) m6A 5'UTR//exon       24981863//27773535//27371828//27773536//22608085
chr2:99343082-99343083(-) m6A 5'UTR//intron       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MGAT4A
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART17-5p
Interactor2: MGAT4A

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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