Basic Information:

  VIRBase ID:  

VHID00368348

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          STRAP:  NM_007178     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	STRAP
miRBase Accession/Entrez ID	MIMAT0003715	11171
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MAWD//PT-WD//UNRIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STRAP	chr12:16054634(+) A-I      intronic chr12:16054635(+) A-I      intronic chr12:16054716(+) A-I      intronic chr12:16054755(+) A-I      intronic chr12:16055082(+) A-I      intronic chr12:16055088(+) A-I      intronic chr12:16055153(+) A-I      intronic chr12:16054600(+) A-I      intronic chr12:16054609(+) A-I      intronic chr12:16055010(+) A-I      intronic chr12:16054599(+) A-I      intronic chr12:16048780(+) A-I      intronic chr12:16054740(+) A-I      intronic chr12:16054723(+) A-I      intronic chr12:16054715(+) A-I      intronic chr12:16054648(+) A-I      intronic chr12:16054630(+) A-I      intronic chr12:16039159(+) A-I      intronic chr12:16055073(+) A-I      intronic chr12:16054990(+) A-I      intronic chr12:16054675(+) A-I      intronic chr12:16054727(+) A-I      intronic chr12:16047325(+) A-I      intronic chr12:16054674(+) A-I      intronic chr12:16040683(+) A-I      intronic chr12:16054619(+) A-I      intronic chr12:16054594(+) A-I      intronic chr12:16054972(+) A-I      intronic chr12:16055049(+) A-I      intronic chr12:16040753(+) A-I      intronic chr12:16054642(+) A-I      intronic chr12:16041635(+) A-I      intronic chr12:16039217(+) A-I      intronic chr12:16055027(+) A-I      intronic chr12:16055091(+) A-I      intronic chr12:16054930(+) A-I      intronic chr12:16054779(+) A-I      intronic chr12:16054633(+) A-I      intronic chr12:16054618(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	STRAP	chr12:16040683(+) A-I intron -    21960545 chr12:16047642(+) A-I intron -    21960545 chr12:16054674(+) A-I intron -    21960545 chr12:16054594(+) A-G intron -    22484847 chr12:16047325(+) A-G intron -    22484847 chr12:16054727(+) A-G intron -    22484847 chr12:16054990(+) A-G intron -    22484847 chr12:16055096(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STRAP	chr12:16035454-16035455(+) m6A 5'UTR       25456834//24981863//22575960 chr12:16035591-16035592(+) m6A 5'UTR       22575960 chr12:16042892-16042893(+) Y 5'UTR//CDS       26075521 chr12:16042912-16042913(+) m6A 3'UTR//CDS       26404942//27773535 chr12:16042925-16042926(+) m6A 3'UTR//CDS       26404942 chr12:16043556-16043557(+) m6A 3'UTR//CDS       26404942 chr12:16043565-16043566(+) m6A 3'UTR//CDS       26404942 chr12:16043570-16043571(+) Y 3'UTR//CDS       26075521 chr12:16043588-16043589(+) m6A 3'UTR//CDS       26404942 chr12:16055951-16055952(+) m6A 3'UTR//exon       27773535 chr12:16056008-16056009(+) m6A 3'UTR//exon       27773535 chr12:16056087-16056088(+) m6A 3'UTR//exon       27773535 chr12:16056235-16056236(+) m6A 3'UTR//exon       27773535 chr12:16056364-16056365(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STRAP	Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: STRAP

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg