Basic Information:

  VIRBase ID:  

VHID00368305

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          SF3A3:  NM_001320830     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	SF3A3
miRBase Accession/Entrez ID	MIMAT0003715	10946
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRP9//PRPF9//SAP61//SF3a60

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SF3A3	chr1:38430157(-) A-I      intronic chr1:38423154(-) A-I      3'UTR chr1:38423150(-) A-I      3'UTR chr1:38423147(-) A-I      3'UTR chr1:38423133(-) A-I      3'UTR chr1:38441680(-) A-I      intronic chr1:38456345(-) A-I      5'UTR chr1:38423141(-) A-I      3'UTR chr1:38423136(-) A-I      3'UTR chr1:38450548(-) A-I      intronic chr1:38449528(-) A-I      intronic chr1:38449038(-) A-I      intronic chr1:38449035(-) A-I      intronic chr1:38448847(-) A-I      intronic chr1:38448775(-) A-I      intronic chr1:38448748(-) A-I      intronic chr1:38443959(-) A-I      intronic chr1:38443942(-) A-I      intronic chr1:38443899(-) A-I      intronic chr1:38443844(-) A-I      intronic chr1:38443140(-) A-I      intronic chr1:38440241(-) A-I      intronic chr1:38440113(-) A-I      intronic chr1:38435963(-) A-I      intronic chr1:38433162(-) A-I      intronic chr1:38433133(-) A-I      intronic chr1:38431647(-) A-I      intronic chr1:38430155(-) A-I      intronic chr1:38430105(-) A-I      intronic chr1:38430094(-) A-I      intronic chr1:38429846(-) A-I      intronic chr1:38429751(-) A-I      intronic chr1:38429694(-) A-I      intronic chr1:38429423(-) A-I      intronic chr1:38429403(-) A-I      intronic chr1:38429367(-) A-I      intronic chr1:38429361(-) A-I      intronic chr1:38429321(-) A-I      intronic chr1:38429296(-) A-I      intronic chr1:38424865(-) A-I      intronic chr1:38425194(-) A-I      intronic chr1:38425208(-) A-I      intronic chr1:38452882(-) A-I      intronic chr1:38450565(-) A-I      intronic chr1:38452803(-) A-I      intronic chr1:38450722(-) A-I      intronic chr1:38450653(-) A-I      intronic chr1:38450640(-) A-I      intronic chr1:38450639(-) A-I      intronic chr1:38428980(-) A-I      intronic chr1:38427169(-) A-I      intronic chr1:38427144(-) A-I      intronic chr1:38427100(-) A-I      intronic chr1:38427089(-) A-I      intronic chr1:38427022(-) A-I      intronic chr1:38452950(-) A-I      intronic chr1:38452954(-) A-I      intronic chr1:38452955(-) A-I      intronic chr1:38426620(-) A-I      intronic chr1:38426614(-) A-I      intronic chr1:38426581(-) A-I      intronic chr1:38426554(-) A-I      intronic chr1:38426530(-) A-I      intronic chr1:38425592(-) A-I      intronic chr1:38425584(-) A-I      intronic chr1:38425219(-) A-I      intronic chr1:38452944(-) A-I      intronic chr1:38452924(-) A-I      intronic chr1:38452889(-) A-I      intronic chr1:38456401(-) A-I      5'UTR chr1:38456398(-) A-I      5'UTR chr1:38456362(-) A-I      5'UTR chr1:38425087(-) A-I      intronic chr1:38449052(-) A-I      intronic chr1:38445840(-) A-I      intronic chr1:38452319(-) A-I      intronic chr1:38426597(-) A-I      intronic chr1:38449389(-) A-I      intronic chr1:38435774(-) A-I      intronic chr1:38427510(-) A-I      intronic chr1:38426385(-) A-I      intronic chr1:38449546(-) A-I      intronic chr1:38435895(-) A-I      intronic chr1:38451800(-) A-I      intronic chr1:38429658(-) A-I      intronic chr1:38430648(-) A-I      intronic chr1:38430167(-) A-I      intronic chr1:38427134(-) A-I      intronic chr1:38456192(-) A-I      5'UTR chr1:38456251(-) A-I      5'UTR chr1:38435349(-) A-I      NonSyn:Glu->Gly chr1:38429393(-) A-I      intronic chr1:38435894(-) A-I      intronic chr1:38429742(-) A-I      intronic chr1:38429671(-) A-I      intronic chr1:38449202(-) A-I      intronic chr1:38448523(-) A-I      intronic chr1:38435718(-) A-I      intronic chr1:38449135(-) A-I      intronic chr1:38430278(-) A-I      intronic chr1:38425241(-) A-I      intronic chr1:38456323(-) A-I      5'UTR chr1:38435704(-) A-I      intronic chr1:38433239(-) A-I      intronic chr1:38427000(-) A-I      intronic chr1:38454929(-) A-I      intronic chr1:38449527(-) A-I      intronic chr1:38428507(-) A-I      intronic chr1:38427180(-) A-I      intronic chr1:38452326(-) A-I      intronic chr1:38456382(-) A-I      5'UTR chr1:38456393(-) A-I      5'UTR chr1:38456585(-) A-I      5'UTR chr1:38429501(-) A-I      intronic chr1:38425209(-) A-I      intronic chr1:38456568(-) A-I      5'UTR chr1:38440139(-) A-I      intronic chr1:38451892(-) A-I      intronic chr1:38448546(-) A-I      intronic chr1:38427675(-) A-I      intronic chr1:38456218(-) A-I      5'UTR chr1:38427173(-) A-I      intronic chr1:38456321(-) A-I      5'UTR chr1:38450620(-) A-I      intronic chr1:38456560(-) A-I      5'UTR chr1:38456256(-) A-I      5'UTR chr1:38456273(-) A-I      5'UTR chr1:38448882(-) A-I      intronic chr1:38435833(-) A-I      intronic chr1:38435920(-) A-I      intronic chr1:38429500(-) A-I      intronic chr1:38429668(-) A-I      intronic chr1:38448684(-) A-I      intronic chr1:38430179(-) A-I      intronic chr1:38426598(-) A-I      intronic chr1:38429805(-) A-I      intronic chr1:38427074(-) A-I      intronic chr1:38456333(-) A-I      5'UTR chr1:38454910(-) A-I      intronic chr1:38449053(-) A-I      intronic chr1:38424875(-) A-I      intronic chr1:38430274(-) A-I      intronic chr1:38448722(-) A-I      intronic chr1:38429429(-) A-I      intronic chr1:38448726(-) A-I      intronic chr1:38454941(-) A-I      intronic chr1:38452362(-) A-I      intronic chr1:38449176(-) A-I      intronic chr1:38452384(-) A-I      intronic chr1:38427091(-) A-I      intronic chr1:38435853(-) A-I      intronic chr1:38448055(-) A-I      intronic chr1:38429438(-) A-I      intronic chr1:38452285(-) A-I      intronic chr1:38435855(-) A-I      intronic chr1:38435720(-) A-I      intronic chr1:38430228(-) A-I      intronic chr1:38427509(-) A-I      intronic chr1:38448510(-) A-I      intronic chr1:38452440(-) A-I      intronic chr1:38450683(-) A-I      intronic chr1:38449595(-) A-I      intronic chr1:38452227(-) A-I      intronic chr1:38452294(-) A-I      intronic chr1:38430279(-) A-I      intronic chr1:38455934(-) A-I      5'UTR chr1:38448852(-) A-I      intronic chr1:38435804(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SF3A3	chr1:38435349(-) A-I exon CDS    15342557 chr1:38449910(-) A-I exon CDS    15342557 chr1:38423079(-) A-T exon 3'UTR    22484847 chr1:38423080(-) C-A exon 3'UTR    22484847 chr1:38425087(-) A-G intron -    22484847 chr1:38426597(-) A-G intron -    22484847 chr1:38426598(-) A-G intron -    22484847 chr1:38427074(-) A-G intron -    22484847 chr1:38427091(-) A-G intron -    22484847 chr1:38427173(-) A-G intron -    22484847 chr1:38427180(-) A-G intron -    22484847 chr1:38428507(-) A-G intron -    22484847 chr1:38429393(-) A-G intron -    22484847 chr1:38429429(-) A-G intron -    22484847 chr1:38429438(-) A-G intron -    22484847 chr1:38429500(-) A-G intron -    22484847 chr1:38429501(-) A-G intron -    22484847 chr1:38429668(-) A-G intron -    22484847 chr1:38430167(-) A-G intron -    22484847 chr1:38430179(-) A-G intron -    22484847 chr1:38430228(-) A-G intron -    22484847 chr1:38430274(-) A-G intron -    22484847 chr1:38430278(-) A-G intron -    22484847 chr1:38430279(-) A-G intron -    22484847 chr1:38430648(-) A-G intron -    22484847 chr1:38431296(-) G-T intron -    22484847 chr1:38435833(-) A-G intron -    22484847 chr1:38435853(-) A-G intron -    22484847 chr1:38435894(-) A-G intron -    22484847 chr1:38435895(-) A-G intron -    22484847 chr1:38440139(-) A-G intron -    22484847 chr1:38448684(-) A-G intron -    22484847 chr1:38448722(-) A-G intron -    22484847 chr1:38448726(-) A-G intron -    22484847 chr1:38448852(-) A-G intron -    22484847 chr1:38448882(-) A-G intron -    22484847 chr1:38449389(-) A-G intron -    22484847 chr1:38449595(-) A-G intron -    22484847 chr1:38450683(-) A-G intron -    22484847 chr1:38451795(-) C-T intron -    22484847 chr1:38452285(-) A-G intron -    22484847 chr1:38452294(-) A-G intron -    22484847 chr1:38452319(-) A-G intron -    22484847 chr1:38452326(-) A-G intron -    22484847 chr1:38452384(-) A-G intron -    22484847 chr1:38452440(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SF3A3	chr1:38422796-38422797(-) m6A 3'UTR       - chr1:38423866-38423867(-) m6A CDS//exon       24981863 chr1:38423872-38423873(-) m6A CDS//exon       24981863 chr1:38423892-38423893(-) m6A CDS//exon       24981863 chr1:38423921-38423922(-) m6A CDS//exon       24981863 chr1:38435068-38435069(-) m6A CDS//exon       27773535 chr1:38435267-38435268(-) m6A CDS//exon       24981863//27773535//27371828 chr1:38435339-38435340(-) Am CDS//exon       - chr1:38435358-38435359(-) m6A CDS//exon       24981863//27773535//27371828 chr1:38435404-38435405(-) m6A CDS//exon       24981863//27773535 chr1:38442604-38442605(-) m6A CDS//exon       27773535 chr1:38442610-38442611(-) m6A CDS//exon       27773535 chr1:38442622-38442623(-) m6A CDS//exon       27773535 chr1:38444474-38444475(-) m6A CDS//exon       27773535 chr1:38444497-38444498(-) m6A CDS//exon       27773535 chr1:38450418-38450419(-) m6A CDS//exon       27773535 chr1:38453286-38453287(-) m6A CDS//exon//intron       27773535 chr1:38453316-38453317(-) m6A CDS//exon//intron       27773535 chr1:38453485-38453486(-) m6A CDS//exon//intron       24209618//27773535//22575960 chr1:38455259-38455260(-) m6A CDS//exon       24209618//27773535//22575960 chr1:38455301-38455302(-) m6A exon//intron       24209618//24981863//27773535//27371828//22575960 chr1:38455630-38455631(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr1:38455713-38455714(-) m6A 5'UTR//exon       24284625//24209618//24981863//27371828//22575960//22608085 chr1:38455744-38455745(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr1:38455806-38455807(-) m6A 5'UTR       24284625//25456834 chr1:38455873-38455874(-) m6A 5'UTR       24284625 chr1:38456116-38456117(-) m6A 5'UTR       27773535 chr1:38456130-38456131(-) m6A 5'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SF3A3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: SF3A3

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.