Detail Information

Basic Information:


  VIRBase ID:  

VHID00368066

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:           SCRN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART17-5p SCRN1
miRBase
Accession/Entrez ID		 MIMAT0003715 9805
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - SES1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SCRN1
chr7:29992088(-) A-I      intronic
chr7:29989243(-) A-I      intronic
chr7:29988868(-) A-I      intronic
chr7:29988681(-) A-I      intronic
chr7:29979744(-) A-I      intronic
chr7:29979720(-) A-I      intronic
chr7:29994425(-) A-I      intronic
chr7:29979708(-) A-I      intronic
chr7:29979642(-) A-I      intronic
chr7:29977821(-) A-I      intronic
chr7:29979026(-) A-I      intronic
chr7:29977815(-) A-I      intronic
chr7:30018870(-) A-I      intronic
chr7:29979600(-) A-I      intronic
chr7:30022217(-) A-I      intronic
chr7:29977808(-) A-I      intronic
chr7:29976660(-) A-I      intronic
chr7:29976654(-) A-I      intronic
chr7:29977813(-) A-I      intronic
chr7:29976610(-) A-I      intronic
chr7:30018922(-) A-I      intronic
chr7:30022242(-) A-I      intronic
chr7:30022592(-) A-I      intronic
chr7:30022725(-) A-I      intronic
chr7:30025666(-) A-I      intronic
chr7:30025668(-) A-I      intronic
chr7:29977812(-) A-I      intronic
chr7:29994418(-) A-I      intronic
chr7:29994386(-) A-I      intronic
chr7:29979640(-) A-I      intronic
chr7:29979586(-) A-I      intronic
chr7:29992182(-) A-I      intronic
chr7:29977866(-) A-I      intronic
chr7:30023649(-) A-I      intronic
chr7:29977741(-) A-I      intronic
chr7:29979005(-) A-I      intronic
chr7:29979733(-) A-I      intronic
chr7:30014488(-) A-I      intronic
chr7:29979523(-) A-I      intronic
chr7:29976418(-) A-I      intronic
chr7:29976473(-) A-I      intronic
chr7:30022199(-) A-I      intronic
chr7:29988742(-) A-I      intronic
chr7:30025846(-) A-I      intronic
chr7:29989090(-) A-I      intronic
chr7:30022551(-) A-I      intronic
chr7:30025740(-) A-I      intronic
chr7:30014517(-) A-I      intronic
chr7:30014571(-) A-I      intronic
chr7:30022566(-) A-I      intronic
chr7:29979015(-) A-I      intronic
chr7:29978993(-) A-I      intronic
chr7:29977677(-) A-I      intronic
chr7:30022570(-) A-I      intronic
chr7:30024290(-) A-I      intronic
chr7:29979644(-) A-I      intronic
chr7:30022472(-) A-I      intronic
chr7:29977713(-) A-I      intronic
chr7:29972630(-) A-I      intronic
chr7:30022223(-) A-I      intronic
chr7:30022061(-) A-I      intronic
chr7:30023700(-) A-I      intronic
chr7:29979077(-) A-I      intronic
chr7:29989397(-) A-I      intronic
chr7:30010992(-) A-I      intronic
chr7:29989421(-) A-I      intronic
chr7:29977850(-) A-I      intronic
chr7:30023759(-) A-I      intronic
chr7:29989382(-) A-I      intronic
chr7:30022204(-) A-I      intronic
chr7:29976406(-) A-I      intronic
chr7:29994466(-) A-I      intronic
chr7:30023587(-) A-I      intronic
chr7:29978928(-) A-I      intronic
chr7:30026479(-) A-I      intronic
chr7:30022213(-) A-I      intronic
chr7:30023656(-) A-I      intronic
chr7:29978922(-) A-I      intronic
chr7:30022619(-) A-I      intronic
chr7:30011149(-) A-I      intronic
chr7:29994434(-) A-I      intronic
chr7:30014424(-) A-I      intronic
chr7:29979006(-) A-I      intronic
chr7:30022593(-) A-I      intronic
chr7:30025606(-) A-I      intronic
chr7:30022175(-) A-I      intronic
chr7:29989488(-) A-I      intronic
chr7:29979749(-) A-I      intronic
chr7:30022159(-) A-I      intronic
chr7:29989329(-) A-I      intronic
chr7:29977809(-) A-I      intronic
chr7:29978890(-) A-I      intronic
chr7:29972057(-) A-I      intronic
chr7:30025805(-) A-I      intronic
chr7:29989265(-) A-I      intronic
chr7:30022748(-) A-I      intronic
chr7:29979700(-) A-I      intronic
chr7:29978996(-) A-I      intronic
chr7:29989550(-) A-I      intronic
chr7:29992071(-) A-I      intronic
chr7:29994437(-) A-I      intronic
chr7:29977783(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SCRN1
chr7:30001688(-) A-I intron -    21960545
chr7:30023700(-) A-I intron -    21960545
chr7:29977712(-) A-G intron -    22484847
chr7:29977717(-) A-G intron -    22484847
chr7:29977783(-) A-G intron -    22484847
chr7:29977809(-) A-G intron -    22484847
chr7:29978967(-) A-G intron -    22484847
chr7:29978969(-) A-G intron -    22484847
chr7:29979005(-) A-G intron -    22484847
chr7:29979006(-) A-G intron -    22484847
chr7:29979523(-) A-G intron -    22484847
chr7:29979641(-) A-G intron -    22484847
chr7:29988742(-) A-G intron -    22484847
chr7:29989260(-) A-G intron -    22484847
chr7:29989265(-) A-G intron -    22484847
chr7:29989382(-) A-G intron -    22484847
chr7:29989397(-) A-G intron -    22484847
chr7:29989488(-) A-G intron -    22484847
chr7:29989550(-) A-G intron -    22484847
chr7:29992071(-) A-G intron -    22484847
chr7:29992224(-) A-G intron -    22484847
chr7:29992294(-) A-G intron -    22484847
chr7:29992308(-) T-C intron -    22484847
chr7:29994434(-) A-G intron -    22484847
chr7:29994437(-) A-G intron -    22484847
chr7:30014424(-) A-G intron -    22484847
chr7:30014488(-) A-G intron -    22484847
chr7:30014517(-) A-G intron -    22484847
chr7:30014544(-) A-G intron -    22484847
chr7:30014549(-) A-G intron -    22484847
chr7:30014570(-) A-G intron -    22484847
chr7:30014571(-) A-G intron -    22484847
chr7:30022061(-) A-G intron -    22484847
chr7:30022159(-) A-G intron -    22484847
chr7:30022174(-) A-G intron -    22484847
chr7:30022177(-) A-G intron -    22484847
chr7:30022204(-) A-G intron -    22484847
chr7:30022213(-) A-G intron -    22484847
chr7:30022223(-) A-G intron -    22484847
chr7:30022551(-) A-G intron -    22484847
chr7:30022570(-) A-G intron -    22484847
chr7:30022593(-) A-G intron -    22484847
chr7:30022611(-) A-G intron -    22484847
chr7:30022619(-) A-G intron -    22484847
chr7:30022726(-) A-G intron -    22484847
chr7:30022741(-) A-G intron -    22484847
chr7:30022748(-) A-G intron -    22484847
chr7:30023587(-) A-G intron -    22484847
chr7:30024950(-) C-T intron -    22484847
chr7:30025606(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SCRN1
chr7:29960650-29960651(-) m6A 3'UTR       24981863//26404942
chr7:29960719-29960720(-) m6A 3'UTR       24981863//26404942
chr7:29960756-29960757(-) m6A 3'UTR       24981863//26404942
chr7:29960809-29960810(-) m6A 3'UTR       24981863
chr7:29962147-29962148(-) Cm 3'UTR       -
chr7:29962344-29962345(-) m6A 3'UTR       24981863//26404942//27773535
chr7:29962442-29962443(-) m6A 3'UTR       24981863//26404942//27773535
chr7:29962467-29962468(-) m6A 3'UTR       24981863//26404942//27773535
chr7:29962543-29962544(-) m6A 3'UTR       27773535
chr7:29962554-29962555(-) m6A 3'UTR       27773535
chr7:29962600-29962601(-) Y 3'UTR       26075521
chr7:29963260-29963261(-) m6A 3'UTR       26404942//27773535
chr7:29963283-29963284(-) m6A 3'UTR       26404942//27773535
chr7:29963440-29963441(-) m6A 3'UTR       24284625//24209618//26404942//27773535
chr7:29963510-29963511(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr7:29963539-29963540(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr7:29963618-29963619(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr7:29963636-29963637(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr7:29980427-29980428(-) m6A CDS       22575960
chr7:29983772-29983773(-) m6A CDS//exon       24981863//27773535
chr7:29986847-29986848(-) m6A CDS//intron       24981863//27773535
chr7:29994880-29994881(-) m6A CDS//exon       24981863//26404942//27773535
chr7:29994919-29994920(-) m6A CDS//exon       26404942//27773535
chr7:29994942-29994943(-) m6A 5'UTR//CDS//exon       27773535
chr7:30008542-30008543(-) m6A CDS//exon//intron       27773535
chr7:30008745-30008746(-) m6A 5'UTR//intron       27773536
chr7:30008776-30008777(-) m6A 5'UTR//intron       27773536
chr7:30009494-30009495(-) m6A 5'UTR//intron       27773535
chr7:30029337-30029338(-) m6A 5'UTR//intron       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SCRN1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART17-5p
Interactor2: SCRN1

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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