Basic Information:

  VIRBase ID:  

VHID00367860

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          RPS6KA4:  NM_001006944     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	RPS6KA4
miRBase Accession/Entrez ID	MIMAT0003715	8986
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MSK2//RSK-B//S6K-alpha-4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPS6KA4	chr11:64133840(+) A-I      intronic chr11:64134963(+) A-I      intronic chr11:64133431(+) A-I      intronic chr11:64133423(+) A-I      intronic chr11:64133823(+) A-I      intronic chr11:64138597(+) A-I      intronic chr11:64133804(+) A-I      intronic chr11:64135048(+) A-I      intronic chr11:64134735(+) A-I      intronic chr11:64134757(+) A-I      intronic chr11:64133782(+) A-I      intronic chr11:64133400(+) A-I      intronic chr11:64133772(+) A-I      intronic chr11:64133717(+) A-I      intronic chr11:64133500(+) A-I      intronic chr11:64133746(+) A-I      intronic chr11:64133669(+) A-I      intronic chr11:64134960(+) A-I      intronic chr11:64133346(+) A-I      intronic chr11:64133418(+) A-I      intronic chr11:64133468(+) A-I      intronic chr11:64133391(+) A-I      intronic chr11:64133495(+) A-I      intronic chr11:64133743(+) A-I      intronic chr11:64136568(+) A-I      intronic chr11:64132351(+) A-I      intronic chr11:64131093(+) A-I      intronic chr11:64133915(+) A-I      intronic chr11:64134857(+) A-I      intronic chr11:64133349(+) A-I      intronic chr11:64133481(+) A-I      intronic chr11:64133921(+) A-I      intronic chr11:64133364(+) A-I      intronic chr11:64132276(+) A-I      intronic chr11:64134922(+) A-I      intronic chr11:64133747(+) A-I      intronic chr11:64133256(+) A-I      intronic chr11:64133432(+) A-I      intronic chr11:64134641(+) A-I      intronic chr11:64133826(+) A-I      intronic chr11:64131138(+) A-I      intronic chr11:64135017(+) A-I      intronic chr11:64131184(+) A-I      intronic chr11:64136550(+) A-I      intronic chr11:64133351(+) A-I      intronic chr11:64133705(+) A-I      intronic chr11:64133808(+) A-I      intronic chr11:64133760(+) A-I      intronic chr11:64134751(+) A-I      intronic chr11:64133249(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPS6KA4	chr11:64136769(+) T-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPS6KA4	chr11:64126888-64126889(+) m6A CDS//exon//intron       24284625//24209618 chr11:64126927-64126928(+) m6A exon//intron       24284625//24209618 chr11:64128051-64128052(+) m6A 3'UTR//CDS//exon       24284625//22575960 chr11:64128074-64128075(+) m6A exon//intron       24284625//22575960 chr11:64128483-64128484(+) m6A exon//intron       22575960 chr11:64128651-64128652(+) m6A 3'UTR//CDS//exon       22575960 chr11:64128678-64128679(+) m6A 3'UTR//CDS//exon       22575960 chr11:64128949-64128950(+) m6A 3'UTR//CDS//exon       22575960 chr11:64136186-64136187(+) m6A 3'UTR//CDS       - chr11:64139051-64139052(+) m6A 3'UTR       24284625//24981863 chr11:64139087-64139088(+) m6A 3'UTR       24284625//24981863 chr11:64139197-64139198(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPS6KA4	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: RPS6KA4

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg