Basic Information:

  VIRBase ID:  

VHID00367825

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          CREG1:  NM_003851     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	CREG1
miRBase Accession/Entrez ID	MIMAT0003715	8804
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CREG

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CREG1	chr1:167519329(-) A-I      intronic chr1:167509292(-) A-I      intronic chr1:167500603(-) A-I      intronic chr1:167500600(-) A-I      intronic chr1:167500601(-) A-I      intronic chr1:167515713(-) A-I      intronic chr1:167515036(-) A-I      intronic chr1:167518997(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CREG1	chr1:167498965-167498966(-) m6A exon       24981863 chr1:167498985-167498986(-) m6A exon       24981863//22608085 chr1:167499045-167499046(-) m6A exon       25456834//24981863//27371828//22608085 chr1:167499051-167499052(-) m6A exon       25456834//24981863//27371828//22608085 chr1:167499088-167499089(-) m6A exon       24209618//25456834//24981863//27371828//22608085 chr1:167499107-167499108(-) m6A exon       24209618//25456834//24981863//27371828//22608085 chr1:167499135-167499136(-) m6A exon       24209618//25456834//24981863//27371828//22608085 chr1:167499150-167499151(-) m6A exon       24209618//25456834//24981863//27371828//22608085 chr1:167499194-167499195(-) m6A exon       25456834//24981863//27371828 chr1:167502613-167502614(-) m6A exon       24981863 chr1:167502626-167502627(-) m6A exon       24981863 chr1:167510295-167510296(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:167510343-167510344(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:167510363-167510364(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:167510375-167510376(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:167510505-167510506(-) m6A 3'UTR//intron       24981863//26404942//27773535 chr1:167510542-167510543(-) m6A 3'UTR//intron       24981863//26404942//27773535 chr1:167510671-167510672(-) m6A 3'UTR//intron       24981863//26404942//27773535 chr1:167510688-167510689(-) m6A 3'UTR//intron       24981863//26404942//27773535 chr1:167510705-167510706(-) m6A 3'UTR//intron       24981863//26404942//27773535 chr1:167510786-167510787(-) m6A 3'UTR//intron       26404942//27773535 chr1:167510821-167510822(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510835-167510836(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510868-167510869(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510886-167510887(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510915-167510916(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510926-167510927(-) m6A 3'UTR//intron       24981863//26404942//27773535//22608085 chr1:167510943-167510944(-) m6A 3'UTR//intron       24981863//26404942//22608085 chr1:167511018-167511019(-) m6A 3'UTR//intron       24981863 chr1:167522862-167522863(-) m6A CDS       24209618//24981863//27371828//27773536//22575960 chr1:167522871-167522872(-) m6A CDS       24209618//24981863//27371828//27773536//22575960 chr1:167522985-167522986(-) m6A 5'UTR       24209618//24981863//27773536 chr1:167522998-167522999(-) m6A 5'UTR       24209618//24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CREG1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: CREG1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg