Basic Information:

  VIRBase ID:  

VHID00367771

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART17-5p:  MIMAT0003715          CNTNAP1:  NM_003632     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART17-5p	CNTNAP1
miRBase Accession/Entrez ID	MIMAT0003715	8506
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CASPR//CHN3//CNTNAP//NRXN4//P190

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CNTNAP1	chr17:40837701(+) A-I      intronic chr17:40848937(+) A-I      intronic chr17:40848930(+) A-I      intronic chr17:40848503(+) A-I      intronic chr17:40848422(+) A-I      intronic chr17:40848442(+) A-I      intronic chr17:40848411(+) A-I      intronic chr17:40848421(+) A-I      intronic chr17:40848717(+) A-I      intronic chr17:40848784(+) A-I      intronic chr17:40848800(+) A-I      intronic chr17:40848982(+) A-I      intronic chr17:40848367(+) A-I      intronic chr17:40846412(+) A-I      intronic chr17:40845861(+) A-I      intronic chr17:40848765(+) A-I      intronic chr17:40846347(+) A-I      intronic chr17:40846563(+) A-I      intronic chr17:40848713(+) A-I      intronic chr17:40848550(+) A-I      intronic chr17:40848617(+) A-I      intronic chr17:40846294(+) A-I      intronic chr17:40845825(+) A-I      intronic chr17:40845854(+) A-I      intronic chr17:40845963(+) A-I      intronic chr17:40848914(+) A-I      intronic chr17:40845839(+) A-I      intronic chr17:40842426(+) A-I      intronic chr17:40848588(+) A-I      intronic chr17:40845856(+) A-I      intronic chr17:40845902(+) A-I      intronic chr17:40845996(+) A-I      intronic chr17:40845807(+) A-I      intronic chr17:40846503(+) A-I      intronic chr17:40846387(+) A-I      intronic chr17:40846654(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CNTNAP1	chr17:40846532(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CNTNAP1	chr17:40834642-40834643(+) m6A 5'UTR       24209618//25456834//24981863 chr17:40834649-40834650(+) m6A 5'UTR       24209618//25456834//24981863 chr17:40834684-40834685(+) m6A 5'UTR       24209618//25456834//24981863 chr17:40834755-40834756(+) m6A 5'UTR       24209618//25456834//24981863 chr17:40834788-40834789(+) m6A 5'UTR       24209618//24981863 chr17:40834833-40834834(+) m6A 5'UTR       24209618//24981863 chr17:40839870-40839871(+) m6A CDS//exon       27371828 chr17:40851093-40851094(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CNTNAP1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART17-5p
Interactor2: CNTNAP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg