Basic Information:

  VIRBase ID:  

VHID00365416

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:  MIMAT0003714          PRRC1:  NM_130809     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART16	PRRC1
miRBase Accession/Entrez ID	MIMAT0003714	133619
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRRC1	chr5:126864087(+) A-I      intronic chr5:126863413(+) A-I      intronic chr5:126863260(+) A-I      intronic chr5:126863305(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRRC1	chr5:126853346-126853347(+) m6A 5'UTR//exon       24284625//24981863 chr5:126859195-126859196(+) m6A CDS//exon       24284625//24209618//24981863 chr5:126859210-126859211(+) m6A CDS//exon       24284625//24209618//24981863 chr5:126859371-126859372(+) m6A exon//intron       24284625 chr5:126859787-126859788(+) m6A exon//intron       24284625//24209618//24981863 chr5:126860471-126860472(+) m6A CDS       24981863 chr5:126862365-126862366(+) m6A CDS       26404942 chr5:126862371-126862372(+) m6A CDS       26404942 chr5:126862408-126862409(+) m6A CDS       26404942 chr5:126862418-126862419(+) Y CDS       26075521 chr5:126869429-126869430(+) m6A CDS       24981863 chr5:126883653-126883654(+) m6A CDS//intron       24284625 chr5:126887420-126887421(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:126887497-126887498(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887580-126887581(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887599-126887600(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887614-126887615(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887627-126887628(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887633-126887634(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:126887777-126887778(+) m6A 3'UTR//exon//intron       26404942 chr5:126887787-126887788(+) m6A 3'UTR//exon//intron       26404942 chr5:126890573-126890574(+) m6A 3'UTR       27773535 chr5:126890578-126890579(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRRC1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART16
Interactor2: PRRC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg