Basic Information:

  VIRBase ID:  

VHID00365088

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:  MIMAT0003714          RHPN2:  NM_033103     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART16	RHPN2
miRBase Accession/Entrez ID	MIMAT0003714	85415
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	P76RBE//RHOBP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RHPN2	chr19:33531693(-) A-I      intronic chr19:33531777(-) A-I      intronic chr19:33531736(-) A-I      intronic chr19:33479023(-) A-I      intronic chr19:33531694(-) A-I      intronic chr19:33529172(-) A-I      intronic chr19:33531705(-) A-I      intronic chr19:33539090(-) A-I      intronic chr19:33531738(-) A-I      intronic chr19:33531626(-) A-I      intronic chr19:33531604(-) A-I      intronic chr19:33531596(-) A-I      intronic chr19:33531320(-) A-I      intronic chr19:33526041(-) A-I      intronic chr19:33526039(-) A-I      intronic chr19:33525969(-) A-I      intronic chr19:33525963(-) A-I      intronic chr19:33525390(-) A-I      intronic chr19:33525122(-) A-I      intronic chr19:33525120(-) A-I      intronic chr19:33525043(-) A-I      intronic chr19:33525037(-) A-I      intronic chr19:33511329(-) A-I      intronic chr19:33508026(-) A-I      intronic chr19:33507471(-) A-I      intronic chr19:33507415(-) A-I      intronic chr19:33504823(-) A-I      intronic chr19:33500822(-) A-I      intronic chr19:33500787(-) A-I      intronic chr19:33499559(-) A-I      intronic chr19:33497200(-) A-I      intronic chr19:33496219(-) A-I      intronic chr19:33496103(-) A-I      intronic chr19:33495739(-) A-I      intronic chr19:33495590(-) A-I      intronic chr19:33495589(-) A-I      intronic chr19:33495227(-) A-I      intronic chr19:33492728(-) A-I      intronic chr19:33489512(-) A-I      intronic chr19:33489471(-) A-I      intronic chr19:33489470(-) A-I      intronic chr19:33489453(-) A-I      intronic chr19:33489305(-) A-I      intronic chr19:33489304(-) A-I      intronic chr19:33489290(-) A-I      intronic chr19:33488669(-) A-I      intronic chr19:33488640(-) A-I      intronic chr19:33488628(-) A-I      intronic chr19:33483900(-) A-I      intronic chr19:33477963(-) A-I      intronic chr19:33477854(-) A-I      intronic chr19:33476395(-) A-I      intronic chr19:33476362(-) A-I      intronic chr19:33476020(-) A-I      intronic chr19:33472265(-) A-I      intronic chr19:33472257(-) A-I      intronic chr19:33472249(-) A-I      intronic chr19:33472247(-) A-I      intronic chr19:33472012(-) A-I      intronic chr19:33471982(-) A-I      intronic chr19:33471916(-) A-I      intronic chr19:33471912(-) A-I      intronic chr19:33471909(-) A-I      intronic chr19:33547095(-) A-I      intronic chr19:33551576(-) A-I      intronic chr19:33551515(-) A-I      intronic chr19:33542710(-) A-I      intronic chr19:33542054(-) A-I      intronic chr19:33539099(-) A-I      intronic chr19:33495126(-) A-I      intronic chr19:33545373(-) A-I      intronic chr19:33477947(-) A-I      intronic chr19:33497285(-) A-I      intronic chr19:33551192(-) A-I      intronic chr19:33476699(-) A-I      intronic chr19:33534098(-) A-I      intronic chr19:33502078(-) A-I      intronic chr19:33490906(-) A-I      intronic chr19:33494147(-) A-I      intronic chr19:33499593(-) A-I      intronic chr19:33505634(-) A-I      intronic chr19:33511299(-) A-I      intronic chr19:33495225(-) A-I      intronic chr19:33516266(-) A-I      intronic chr19:33483880(-) A-I      intronic chr19:33476720(-) A-I      intronic chr19:33519335(-) A-I      intronic chr19:33542682(-) A-I      intronic chr19:33551544(-) A-I      intronic chr19:33531791(-) A-I      intronic chr19:33471841(-) A-I      intronic chr19:33476286(-) A-I      intronic chr19:33471381(-) A-I      intronic chr19:33529567(-) A-I      intronic chr19:33519201(-) A-I      intronic chr19:33531315(-) A-I      intronic chr19:33495111(-) A-I      intronic chr19:33476734(-) A-I      intronic chr19:33472006(-) A-I      intronic chr19:33519136(-) A-I      intronic chr19:33549918(-) A-I      intronic chr19:33489501(-) A-I      intronic chr19:33489431(-) A-I      intronic chr19:33525039(-) A-I      intronic chr19:33502116(-) A-I      intronic chr19:33511304(-) A-I      intronic chr19:33481128(-) A-I      intronic chr19:33495576(-) A-I      intronic chr19:33545134(-) A-I      intronic chr19:33483902(-) A-I      intronic chr19:33483896(-) A-I      intronic chr19:33501816(-) A-I      intronic chr19:33497201(-) A-I      intronic chr19:33536079(-) A-I      intronic chr19:33529275(-) A-I      intronic chr19:33531316(-) A-I      intronic chr19:33502144(-) A-I      intronic chr19:33495172(-) A-I      intronic chr19:33501709(-) A-I      intronic chr19:33476202(-) A-I      intronic chr19:33545352(-) A-I      intronic chr19:33526043(-) A-I      intronic chr19:33494978(-) A-I      intronic chr19:33505352(-) A-I      intronic chr19:33534093(-) A-I      intronic chr19:33495564(-) A-I      intronic chr19:33483530(-) A-I      intronic chr19:33527240(-) A-I      intronic chr19:33524306(-) A-I      intronic chr19:33499260(-) A-I      intronic chr19:33500240(-) A-I      intronic chr19:33495558(-) A-I      intronic chr19:33499564(-) A-I      intronic chr19:33495559(-) A-I      intronic chr19:33549879(-) A-I      intronic chr19:33533666(-) A-I      intronic chr19:33528923(-) A-I      intronic chr19:33501868(-) A-I      intronic chr19:33476421(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RHPN2	chr19:33494824(-) A-I intron -    21960545 chr19:33494910(-) A-I intron -    21960545 chr19:33495083(-) A-I intron -    21960545 chr19:33495236(-) A-I intron -    21960545 chr19:33516266(-) A-I intron -    21960545 chr19:33538718(-) A-I intron -    21960545 chr19:33551593(-) A-I intron -    21960545 chr19:33483999(-) T-C intron -    22484847 chr19:33510338(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RHPN2	chr19:33469514-33469515(-) m6A 3'UTR//exon       27773535 chr19:33469635-33469636(-) m6A 3'UTR//exon       27773535 chr19:33470710-33470711(-) m6A 3'UTR//exon       24981863//27773535 chr19:33470735-33470736(-) m6A 3'UTR//exon       24981863//27773535 chr19:33470777-33470778(-) m6A 3'UTR//exon       24981863//27773535 chr19:33470870-33470871(-) m6A 3'UTR//exon       25456834//24981863//27773535//27371828//22608085 chr19:33470891-33470892(-) m6A 3'UTR//exon       25456834//24981863//27773535//27371828//22608085 chr19:33470917-33470918(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535//27371828//22608085 chr19:33471015-33471016(-) m6A 3'UTR//CDS//exon       25456834//24981863//22608085 chr19:33471019-33471020(-) m6A 3'UTR//CDS//exon       24981863//27773535 chr19:33471071-33471072(-) m6A 3'UTR//CDS//exon       24981863//27773535 chr19:33471080-33471081(-) m6A 3'UTR//CDS//exon       24981863//27773535 chr19:33517415-33517416(-) m6A CDS//exon       27773536 chr19:33517439-33517440(-) m6A CDS//exon       27773536 chr19:33517475-33517476(-) m6A CDS//exon       27773536 chr19:33517526-33517527(-) m6A CDS//exon       27773536 chr19:33517541-33517542(-) m6A exon//intron       27773536 chr19:33517614-33517615(-) m6A exon//intron       27773536 chr19:33535248-33535249(-) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RHPN2	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART16
Interactor2: RHPN2

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.