Detail Information

Basic Information:


  VIRBase ID:  

VHID00364535

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:           USP28:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART16 USP28
miRBase
Accession/Entrez ID		 MIMAT0003714 57646
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR USP28
chr11:113708417(-) A-I      intronic
chr11:113708416(-) A-I      intronic
chr11:113669085(-) A-I      3'UTR
chr11:113669074(-) A-I      3'UTR
chr11:113669073(-) A-I      3'UTR
chr11:113669027(-) A-I      3'UTR
chr11:113669025(-) A-I      3'UTR
chr11:113669015(-) A-I      3'UTR
chr11:113689483(-) A-I      intronic
chr11:113708415(-) A-I      intronic
chr11:113708461(-) A-I      intronic
chr11:113689333(-) A-I      intronic
chr11:113689321(-) A-I      intronic
chr11:113689106(-) A-I      intronic
chr11:113689050(-) A-I      intronic
chr11:113689048(-) A-I      intronic
chr11:113690509(-) A-I      intronic
chr11:113722895(-) A-I      intronic
chr11:113689043(-) A-I      intronic
chr11:113689042(-) A-I      intronic
chr11:113689908(-) A-I      intronic
chr11:113689012(-) A-I      intronic
chr11:113688971(-) A-I      intronic
chr11:113688970(-) A-I      intronic
chr11:113688966(-) A-I      intronic
chr11:113688926(-) A-I      intronic
chr11:113688912(-) A-I      intronic
chr11:113688911(-) A-I      intronic
chr11:113688909(-) A-I      intronic
chr11:113697196(-) A-I      intronic
chr11:113687153(-) A-I      intronic
chr11:113687093(-) A-I      intronic
chr11:113689412(-) A-I      intronic
chr11:113682244(-) A-I      intronic
chr11:113695627(-) A-I      intronic
chr11:113681568(-) A-I      intronic
chr11:113681565(-) A-I      intronic
chr11:113723017(-) A-I      intronic
chr11:113681508(-) A-I      intronic
chr11:113681482(-) A-I      intronic
chr11:113676878(-) A-I      intronic
chr11:113700431(-) A-I      intronic
chr11:113689399(-) A-I      intronic
chr11:113722822(-) A-I      intronic
chr11:113740029(-) A-I      intronic
chr11:113681570(-) A-I      intronic
chr11:113681593(-) A-I      intronic
chr11:113722883(-) A-I      intronic
chr11:113723023(-) A-I      intronic
chr11:113690476(-) A-I      intronic
chr11:113689918(-) A-I      intronic
chr11:113726594(-) A-I      intronic
chr11:113716375(-) A-I      intronic
chr11:113715733(-) A-I      intronic
chr11:113702970(-) A-I      intronic
chr11:113722811(-) A-I      intronic
chr11:113725261(-) A-I      intronic
chr11:113700484(-) A-I      intronic
chr11:113695620(-) A-I      intronic
chr11:113697519(-) A-I      intronic
chr11:113722889(-) A-I      intronic
chr11:113689870(-) A-I      intronic
chr11:113689336(-) A-I      intronic
chr11:113689973(-) A-I      intronic
chr11:113695614(-) A-I      intronic
chr11:113695553(-) A-I      intronic
chr11:113697472(-) A-I      intronic
chr11:113700464(-) A-I      intronic
chr11:113695410(-) A-I      intronic
chr11:113695409(-) A-I      intronic
chr11:113689539(-) A-I      intronic
chr11:113726421(-) A-I      intronic
chr11:113732947(-) A-I      intronic
chr11:113734284(-) A-I      intronic
chr11:113695408(-) A-I      intronic
chr11:113690030(-) A-I      intronic
chr11:113692999(-) A-I      intronic
chr11:113706544(-) A-I      intronic
chr11:113715780(-) A-I      intronic
chr11:113692992(-) A-I      intronic
chr11:113681579(-) A-I      intronic
chr11:113716474(-) A-I      intronic
chr11:113692980(-) A-I      intronic
chr11:113690606(-) A-I      intronic
chr11:113690570(-) A-I      intronic
chr11:113689581(-) A-I      intronic
chr11:113716479(-) A-I      intronic
chr11:113716498(-) A-I      intronic
chr11:113689547(-) A-I      intronic
chr11:113716561(-) A-I      intronic
chr11:113689507(-) A-I      intronic
chr11:113722780(-) A-I      intronic
chr11:113689501(-) A-I      intronic
chr11:113722781(-) A-I      intronic
chr11:113689500(-) A-I      intronic
chr11:113689471(-) A-I      intronic
chr11:113697206(-) A-I      intronic
chr11:113668973(-) A-I      3'UTR
chr11:113693281(-) A-I      intronic
chr11:113689932(-) A-I      intronic
chr11:113716443(-) A-I      intronic
chr11:113725343(-) A-I      intronic
chr11:113681449(-) A-I      intronic
chr11:113716583(-) A-I      intronic
chr11:113709962(-) A-I      intronic
chr11:113697256(-) A-I      intronic
chr11:113709959(-) A-I      intronic
chr11:113703550(-) A-I      intronic
chr11:113680498(-) A-I      intronic
chr11:113697170(-) A-I      intronic
chr11:113725351(-) A-I      intronic
chr11:113689887(-) A-I      intronic
chr11:113708422(-) A-I      intronic
chr11:113690510(-) A-I      intronic
chr11:113702999(-) A-I      intronic
chr11:113671000(-) A-I      intronic
chr11:113693088(-) A-I      intronic
chr11:113681574(-) A-I      intronic
chr11:113693286(-) A-I      intronic
chr11:113739992(-) A-I      intronic
chr11:113689920(-) A-I      intronic
chr11:113690023(-) A-I      intronic
chr11:113716017(-) A-I      intronic
chr11:113689038(-) A-I      intronic
chr11:113695515(-) A-I      intronic
chr11:113695273(-) A-I      intronic
chr11:113695278(-) A-I      intronic
chr11:113729872(-) A-I      intronic
chr11:113689907(-) A-I      intronic
chr11:113715903(-) A-I      intronic
chr11:113715785(-) A-I      intronic
chr11:113690107(-) A-I      intronic
chr11:113690538(-) A-I      intronic
chr11:113682240(-) A-I      intronic
chr11:113678068(-) A-I      intronic
chr11:113693235(-) A-I      intronic
chr11:113690034(-) A-I      intronic
chr11:113690494(-) A-I      intronic
chr11:113689435(-) A-I      intronic
chr11:113726428(-) A-I      intronic
chr11:113743087(-) A-I      intronic
chr11:113689869(-) A-I      intronic
chr11:113697271(-) A-I      intronic
chr11:113689927(-) A-I      intronic
chr11:113689461(-) A-I      intronic
chr11:113708392(-) A-I      intronic
chr11:113726511(-) A-I      intronic
chr11:113671693(-) A-I      intronic
chr11:113700540(-) A-I      intronic
chr11:113700392(-) A-I      intronic
chr11:113689526(-) A-I      intronic
chr11:113710050(-) A-I      intronic
chr11:113735707(-) A-I      intronic
chr11:113690108(-) A-I      intronic
chr11:113689946(-) A-I      intronic
chr11:113708391(-) A-I      intronic
chr11:113690114(-) A-I      intronic
chr11:113693309(-) A-I      intronic
chr11:113689475(-) A-I      intronic
chr11:113690544(-) A-I      intronic
chr11:113708386(-) A-I      intronic
chr11:113726550(-) A-I      intronic
chr11:113695544(-) A-I      intronic
chr11:113700490(-) A-I      intronic
chr11:113682230(-) A-I      intronic
chr11:113690580(-) A-I      intronic
chr11:113725229(-) A-I      intronic
chr11:113734880(-) A-I      intronic
chr11:113703048(-) A-I      intronic
chr11:113693308(-) A-I      intronic
chr11:113723022(-) A-I      intronic
chr11:113695591(-) A-I      intronic
chr11:113689410(-) A-I      intronic
chr11:113708414(-) A-I      intronic
chr11:113682408(-) A-I      intronic
chr11:113681576(-) A-I      intronic
chr11:113681575(-) A-I      intronic
chr11:113690014(-) A-I      intronic
chr11:113728781(-) A-I      intronic
chr11:113697517(-) A-I      intronic
chr11:113706546(-) A-I      intronic
chr11:113695177(-) A-I      intronic
chr11:113735723(-) A-I      intronic
chr11:113700383(-) A-I      intronic
chr11:113689999(-) A-I      intronic
chr11:113700495(-) A-I      intronic
chr11:113697186(-) A-I      intronic
chr11:113681525(-) A-I      intronic
chr11:113700452(-) A-I      intronic
chr11:113689434(-) A-I      intronic
chr11:113690574(-) A-I      intronic
chr11:113722418(-) A-I      intronic
chr11:113708432(-) A-I      intronic
chr11:113697202(-) A-I      intronic
chr11:113720760(-) A-I      intronic
chr11:113682247(-) A-I      intronic
chr11:113689931(-) A-I      intronic
chr11:113689867(-) A-I      intronic
chr11:113695178(-) A-I      intronic
chr11:113669090(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED USP28
chr11:113689867(-) A-I intron -    15342557
chr11:113689869(-) A-I intron -    15342557
chr11:113689870(-) A-I intron -    15342557
chr11:113689887(-) A-I intron -    15342557
chr11:113689907(-) A-I intron -    15342557
chr11:113689908(-) A-I intron -    15342557
chr11:113689918(-) A-I intron -    15342557
chr11:113689920(-) A-I intron -    15342557
chr11:113689927(-) A-I intron -    15342557
chr11:113689931(-) A-I intron -    15342557
chr11:113689932(-) A-I intron -    15342557
chr11:113689946(-) A-I intron -    15342557
chr11:113689973(-) A-I intron -    15342557
chr11:113690023(-) A-I intron -    15342557
chr11:113690034(-) A-I intron -    15342557
chr11:113690107(-) A-I intron -    15342557
chr11:113690108(-) A-I intron -    15342557
chr11:113690114(-) A-I intron -    15342557
chr11:113690494(-) A-I intron -    15342557
chr11:113690509(-) A-I intron -    15342557
chr11:113690510(-) A-I intron -    15342557
chr11:113690538(-) A-I intron -    15342557
chr11:113690574(-) A-I intron -    15342557
chr11:113690580(-) A-I intron -    15342557
chr11:113668814(-) C-A exon 3'UTR    21725310
chr11:113681574(-) A-G intron -    22484847
chr11:113681575(-) A-G intron -    22484847
chr11:113681576(-) A-G intron -    22484847
chr11:113681579(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase USP28
chr11:113669842-113669843(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr11:113670099-113670100(-) m6A 3'UTR//CDS//exon       27773535
chr11:113672239-113672240(-) m6A 3'UTR//CDS//exon       27773535
chr11:113675439-113675440(-) m6A 3'UTR//CDS       24981863
chr11:113675624-113675625(-) m6A 3'UTR//CDS       24981863
chr11:113675635-113675636(-) m6A 3'UTR//CDS       24981863
chr11:113675722-113675723(-) m6A 3'UTR//CDS       24981863
chr11:113691604-113691605(-) m6A intron       22608085
chr11:113691619-113691620(-) m6A intron       22608085
chr11:113691656-113691657(-) m6A intron       22608085
chr11:113691954-113691955(-) m6A intron       22608085
chr11:113691962-113691963(-) m6A intron       22608085
chr11:113692063-113692064(-) m6A intron       25456834//22608085
chr11:113692070-113692071(-) m6A intron       25456834//22608085
chr11:113692159-113692160(-) m6A intron       22608085
chr11:113692189-113692190(-) m6A intron       22608085
chr11:113697957-113697958(-) m6A 3'UTR//CDS       27773535
chr11:113725034-113725035(-) Y CDS//exon//intron       26075521
chr11:113745469-113745470(-) m6A 5'UTR//intron       22608085
chr11:113745503-113745504(-) m6A 5'UTR//intron       22608085
chr11:113746252-113746253(-) m6A 5'UTR//exon       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate USP28
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART16
Interactor2: USP28

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA
Support Database RepTar//VmiReg

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