Basic Information:

  VIRBase ID:  

VHID00364333

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:  MIMAT0003714          ZC3H15:  NM_018471     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART16	ZC3H15
miRBase Accession/Entrez ID	MIMAT0003714	55854
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HT010//LEREPO4//MSTP012

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZC3H15	chr2:187371544(+) A-I      Syn:Thr->Thr chr2:187366713(+) A-I      intronic chr2:187366565(+) A-I      intronic chr2:187366525(+) A-I      intronic chr2:187371248(+) A-I      intronic chr2:187366820(+) A-I      intronic chr2:187366847(+) A-I      intronic chr2:187366925(+) A-I      intronic chr2:187371240(+) A-I      intronic chr2:187367040(+) A-I      intronic chr2:187366639(+) A-I      intronic chr2:187366895(+) A-I      intronic chr2:187366818(+) A-I      intronic chr2:187366868(+) A-I      intronic chr2:187366922(+) A-I      intronic chr2:187367062(+) A-I      intronic chr2:187367043(+) A-I      intronic chr2:187366463(+) A-I      intronic chr2:187366924(+) A-I      intronic chr2:187366622(+) A-I      intronic chr2:187366912(+) A-I      intronic chr2:187366600(+) A-I      intronic chr2:187366508(+) A-I      intronic chr2:187366935(+) A-I      intronic chr2:187366919(+) A-I      intronic chr2:187366538(+) A-I      intronic chr2:187366957(+) A-I      intronic chr2:187366959(+) A-I      intronic chr2:187366928(+) A-I      intronic chr2:187366699(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZC3H15	chr2:187366895(+) A-I intron -    22327324 chr2:187367043(+) A-I intron -    22327324 chr2:187366503(+) A-G intron -    22484847 chr2:187366508(+) A-G intron -    22484847 chr2:187366538(+) A-G intron -    22484847 chr2:187366556(+) A-G intron -    22484847 chr2:187366818(+) A-G intron -    22484847 chr2:187366876(+) A-G intron -    22484847 chr2:187366895(+) A-G intron -    22484847 chr2:187366896(+) A-G intron -    22484847 chr2:187366922(+) A-G intron -    22484847 chr2:187366928(+) A-G intron -    22484847 chr2:187366979(+) A-G intron -    22484847 chr2:187367043(+) A-G intron -    22484847 chr2:187367054(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZC3H15	chr2:187351054-187351055(+) m6A 5'UTR//exon       24981863 chr2:187351123-187351124(+) m6A CDS//exon       24981863//27773535 chr2:187351641-187351642(+) m6A exon//intron       24981863//27773535 chr2:187351714-187351715(+) m6A exon//intron       24981863//27773535 chr2:187352042-187352043(+) m6A exon//intron       24981863 chr2:187352063-187352064(+) m6A exon//intron       24981863 chr2:187352076-187352077(+) m6A exon//intron       24981863 chr2:187359960-187359961(+) m6A CDS//exon       24981863//22575960 chr2:187359965-187359966(+) m6A CDS//exon       24981863//22575960 chr2:187364988-187364989(+) m6A 3'UTR//CDS//exon       24981863//27773535 chr2:187366042-187366043(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535//22575960 chr2:187366141-187366142(+) m6A CDS//exon//intron       24981863//27773535//22575960 chr2:187367267-187367268(+) m6A CDS//exon//intron       24981863//27773535//22575960 chr2:187367298-187367299(+) m6A CDS//intron       24981863//27773535//22575960 chr2:187367305-187367306(+) m6A CDS//intron       24981863//27773535//22575960 chr2:187368789-187368790(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr2:187369839-187369840(+) m6A exon//intron       24981863//27773535 chr2:187369850-187369851(+) m6A exon//intron       24981863//27773535 chr2:187370248-187370249(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr2:187370266-187370267(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr2:187370272-187370273(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr2:187370501-187370502(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr2:187370553-187370554(+) m6A 3'UTR//CDS//exon       24981863//26404942//27773535//22575960 chr2:187370614-187370615(+) m6A 3'UTR//intron       24981863//27773535 chr2:187370812-187370813(+) m6A 3'UTR//intron       24981863//27773535 chr2:187371505-187371506(+) m6A CDS//exon       24981863//27773535 chr2:187372128-187372129(+) m6A CDS//intron       24981863//27773535 chr2:187372164-187372165(+) m6A CDS//intron       24981863//27773535 chr2:187373272-187373273(+) m6A CDS//exon       24981863//27773535//22608085 chr2:187373335-187373336(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr2:187373420-187373421(+) m6A 3'UTR//CDS       24981863//26404942//27773535//22608085 chr2:187373466-187373467(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr2:187373787-187373788(+) m6A 3'UTR       26404942//27773535 chr2:187373794-187373795(+) m6A 3'UTR       26404942//27773535 chr2:187373873-187373874(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr2:187373883-187373884(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr2:187373910-187373911(+) m6A 3'UTR       24981863//26404942//27773535//22608085 chr2:187373945-187373946(+) m6A 3'UTR       24981863//27773535//22608085 chr2:187373957-187373958(+) m6A 3'UTR       24981863//27773535//22608085 chr2:187373971-187373972(+) m6A 3'UTR       24981863//27773535//22608085 chr2:187374065-187374066(+) m6A 3'UTR       24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZC3H15	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART16
Interactor2: ZC3H15

Evidence Support:

Prediction-Evidence	cRep//PITA
Support Database	RepTar//VmiReg