Basic Information:

  VIRBase ID:  

VHID00364192

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:  MIMAT0003714          TBCCD1:  NM_018138     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART16	TBCCD1
miRBase Accession/Entrez ID	MIMAT0003714	55171
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TBCCD1	chr3:186269638(-) A-I      intronic chr3:186267258(-) A-I      intronic chr3:186271814(-) A-I      intronic chr3:186276696(-) A-I      intronic chr3:186269733(-) A-I      intronic chr3:186271733(-) A-I      intronic chr3:186271774(-) A-I      intronic chr3:186267204(-) A-I      intronic chr3:186271801(-) A-I      intronic chr3:186267818(-) A-I      intronic chr3:186269546(-) A-I      intronic chr3:186267930(-) A-I      intronic chr3:186267995(-) A-I      intronic chr3:186271812(-) A-I      intronic chr3:186269576(-) A-I      intronic chr3:186271845(-) A-I      intronic chr3:186265668(-) A-I      intronic chr3:186265115(-) A-I      intronic chr3:186265244(-) A-I      intronic chr3:186267964(-) A-I      intronic chr3:186267894(-) A-I      intronic chr3:186269683(-) A-I      intronic chr3:186265107(-) A-I      intronic chr3:186265221(-) A-I      intronic chr3:186269609(-) A-I      intronic chr3:186268263(-) A-I      intronic chr3:186265193(-) A-I      intronic chr3:186265204(-) A-I      intronic chr3:186271807(-) A-I      intronic chr3:186271765(-) A-I      intronic chr3:186267415(-) A-I      intronic chr3:186268108(-) A-I      intronic chr3:186265243(-) A-I      intronic chr3:186269592(-) A-I      intronic chr3:186265209(-) A-I      intronic chr3:186269639(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TBCCD1	chr3:186264473(-) C-T exon 3'UTR    21725310 chr3:186265107(-) A-G intron -    22484847 chr3:186265115(-) A-G intron -    22484847 chr3:186265204(-) A-G intron -    22484847 chr3:186267833(-) A-G intron -    22484847 chr3:186267851(-) T-C intron -    22484847 chr3:186267869(-) T-C intron -    22484847 chr3:186269592(-) A-G intron -    22484847 chr3:186269609(-) A-G intron -    22484847 chr3:186269683(-) A-G intron -    22484847 chr3:186269714(-) A-G intron -    22484847 chr3:186271807(-) A-G intron -    22484847 chr3:186271812(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TBCCD1	chr3:186264218-186264219(-) m6A 3'UTR       27773535 chr3:186264228-186264229(-) m6A 3'UTR       27773535 chr3:186264244-186264245(-) m6A 3'UTR       27773535 chr3:186264263-186264264(-) m6A 3'UTR       27773535 chr3:186264318-186264319(-) m6A 3'UTR       27773535 chr3:186264648-186264649(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:186264656-186264657(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:186264690-186264691(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:186264697-186264698(-) m6A 3'UTR       24981863//27773535//22608085 chr3:186268922-186268923(-) m6A 3'UTR       24981863//27773535//22608085 chr3:186268953-186268954(-) m6A CDS       27773535//22608085 chr3:186268984-186268985(-) m6A CDS       27773535//22608085 chr3:186269001-186269002(-) m6A CDS       24981863//27773535 chr3:186269032-186269033(-) m6A CDS       24981863//27773535 chr3:186271145-186271146(-) m6A exon//intron       24981863//27773535 chr3:186271383-186271384(-) m6A exon//intron       24981863//27773535 chr3:186272067-186272068(-) m6A CDS//exon       24981863//27773535 chr3:186272092-186272093(-) m6A CDS//exon       24981863//27773535 chr3:186272153-186272154(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr3:186272231-186272232(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr3:186272289-186272290(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:186272303-186272304(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:186272349-186272350(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:186272354-186272355(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:186272452-186272453(-) Y CDS       26075521 chr3:186272484-186272485(-) m6A CDS       24284625//24209618//24981863//27773535 chr3:186272864-186272865(-) m6A CDS       27773535 chr3:186274284-186274285(-) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr3:186274291-186274292(-) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr3:186274308-186274309(-) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr3:186274363-186274364(-) m6A CDS       24284625//24981863//27773535//22608085 chr3:186274486-186274487(-) m6A CDS       24284625 chr3:186282079-186282080(-) m6A CDS//intron       - chr3:186287968-186287969(-) m6A 5'UTR       27773535 chr3:186288046-186288047(-) m6A 5'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TBCCD1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART16
Interactor2: TBCCD1

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg