Detail Information

Basic Information:


  VIRBase ID:  

VHID00362657

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART16:           WIPF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART16 WIPF1
miRBase
Accession/Entrez ID		 MIMAT0003714 7456
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - PRPL-2//WAS2//WASPIP//WIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR WIPF1
chr2:175444937(-) A-I      intronic
chr2:175440736(-) A-I      intronic
chr2:175465724(-) A-I      intronic
chr2:175465796(-) A-I      intronic
chr2:175541774(-) A-I      intronic
chr2:175442450(-) A-I      intronic
chr2:175442471(-) A-I      intronic
chr2:175444906(-) A-I      intronic
chr2:175444911(-) A-I      intronic
chr2:175442442(-) A-I      intronic
chr2:175442437(-) A-I      intronic
chr2:175442433(-) A-I      intronic
chr2:175442410(-) A-I      intronic
chr2:175541709(-) A-I      intronic
chr2:175541782(-) A-I      intronic
chr2:175541798(-) A-I      intronic
chr2:175541799(-) A-I      intronic
chr2:175541858(-) A-I      intronic
chr2:175541866(-) A-I      intronic
chr2:175440880(-) A-I      intronic
chr2:175440724(-) A-I      intronic
chr2:175440548(-) A-I      intronic
chr2:175430782(-) A-I      intronic
chr2:175430780(-) A-I      intronic
chr2:175430779(-) A-I      intronic
chr2:175430776(-) A-I      intronic
chr2:175430736(-) A-I      intronic
chr2:175430723(-) A-I      intronic
chr2:175429126(-) A-I      intronic
chr2:175429112(-) A-I      intronic
chr2:175429092(-) A-I      intronic
chr2:175429086(-) A-I      intronic
chr2:175428249(-) A-I      intronic
chr2:175428220(-) A-I      intronic
chr2:175442432(-) A-I      intronic
chr2:175540205(-) A-I      intronic
chr2:175540223(-) A-I      intronic
chr2:175540319(-) A-I      intronic
chr2:175540337(-) A-I      intronic
chr2:175540710(-) A-I      intronic
chr2:175540800(-) A-I      intronic
chr2:175540804(-) A-I      intronic
chr2:175428128(-) A-I      intronic
chr2:175428106(-) A-I      intronic
chr2:175428082(-) A-I      intronic
chr2:175540813(-) A-I      intronic
chr2:175442519(-) A-I      intronic
chr2:175442474(-) A-I      intronic
chr2:175442523(-) A-I      intronic
chr2:175443857(-) A-I      intronic
chr2:175443942(-) A-I      intronic
chr2:175444709(-) A-I      intronic
chr2:175444867(-) A-I      intronic
chr2:175444875(-) A-I      intronic
chr2:175447317(-) A-I      intronic
chr2:175448624(-) A-I      intronic
chr2:175449557(-) A-I      intronic
chr2:175451808(-) A-I      intronic
chr2:175454712(-) A-I      intronic
chr2:175463278(-) A-I      intronic
chr2:175463279(-) A-I      intronic
chr2:175465728(-) A-I      intronic
chr2:175465741(-) A-I      intronic
chr2:175465749(-) A-I      intronic
chr2:175465750(-) A-I      intronic
chr2:175465768(-) A-I      intronic
chr2:175465788(-) A-I      intronic
chr2:175465810(-) A-I      intronic
chr2:175465858(-) A-I      intronic
chr2:175465859(-) A-I      intronic
chr2:175465897(-) A-I      intronic
chr2:175465911(-) A-I      intronic
chr2:175469978(-) A-I      intronic
chr2:175469989(-) A-I      intronic
chr2:175470066(-) A-I      intronic
chr2:175471942(-) A-I      intronic
chr2:175471967(-) A-I      intronic
chr2:175472068(-) A-I      intronic
chr2:175483810(-) A-I      intronic
chr2:175484115(-) A-I      intronic
chr2:175442539(-) A-I      intronic
chr2:175442552(-) A-I      intronic
chr2:175443838(-) A-I      intronic
chr2:175442462(-) A-I      intronic
chr2:175442449(-) A-I      intronic
chr2:175484126(-) A-I      intronic
chr2:175484159(-) A-I      intronic
chr2:175442515(-) A-I      intronic
chr2:175492329(-) A-I      intronic
chr2:175492331(-) A-I      intronic
chr2:175492386(-) A-I      intronic
chr2:175492390(-) A-I      intronic
chr2:175492399(-) A-I      intronic
chr2:175492403(-) A-I      intronic
chr2:175492446(-) A-I      intronic
chr2:175492452(-) A-I      intronic
chr2:175492456(-) A-I      intronic
chr2:175497405(-) A-I      intronic
chr2:175504046(-) A-I      intronic
chr2:175504060(-) A-I      intronic
chr2:175504067(-) A-I      intronic
chr2:175504160(-) A-I      intronic
chr2:175504190(-) A-I      intronic
chr2:175511375(-) A-I      intronic
chr2:175530817(-) A-I      intronic
chr2:175530829(-) A-I      intronic
chr2:175540157(-) A-I      intronic
chr2:175540158(-) A-I      intronic
chr2:175540177(-) A-I      intronic
chr2:175492299(-) A-I      intronic
chr2:175440448(-) A-I      intronic
chr2:175444916(-) A-I      intronic
chr2:175429735(-) A-I      intronic
chr2:175443980(-) A-I      intronic
chr2:175449599(-) A-I      intronic
chr2:175444827(-) A-I      intronic
chr2:175429129(-) A-I      intronic
chr2:175449540(-) A-I      intronic
chr2:175442469(-) A-I      intronic
chr2:175440860(-) A-I      intronic
chr2:175444771(-) A-I      intronic
chr2:175442570(-) A-I      intronic
chr2:175444897(-) A-I      intronic
chr2:175443939(-) A-I      intronic
chr2:175442643(-) A-I      intronic
chr2:175444817(-) A-I      intronic
chr2:175483806(-) A-I      intronic
chr2:175484160(-) A-I      intronic
chr2:175484163(-) A-I      intronic
chr2:175502351(-) A-I      intronic
chr2:175443883(-) A-I      intronic
chr2:175428108(-) A-I      intronic
chr2:175502322(-) A-I      intronic
chr2:175511990(-) A-I      intronic
chr2:175428097(-) A-I      intronic
chr2:175512239(-) A-I      intronic
chr2:175483793(-) A-I      intronic
chr2:175442525(-) A-I      intronic
chr2:175428188(-) A-I      intronic
chr2:175442571(-) A-I      intronic
chr2:175440870(-) A-I      intronic
chr2:175443884(-) A-I      intronic
chr2:175541773(-) A-I      intronic
chr2:175449605(-) A-I      intronic
chr2:175428290(-) A-I      intronic
chr2:175442535(-) A-I      intronic
chr2:175442590(-) A-I      intronic
chr2:175444007(-) A-I      intronic
chr2:175472074(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED WIPF1
chr2:175440870(-) A-I intron -    22327324
chr2:175442469(-) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase WIPF1
chr2:175425046-175425047(-) m6A 3'UTR       26404942
chr2:175425074-175425075(-) m6A 3'UTR       26404942
chr2:175425095-175425096(-) m6A 3'UTR       26404942
chr2:175425711-175425712(-) m6A 3'UTR       26404942
chr2:175425805-175425806(-) m6A 3'UTR       26404942
chr2:175425867-175425868(-) m6A 3'UTR       26404942
chr2:175425995-175425996(-) m6A 3'UTR       24981863
chr2:175426018-175426019(-) m6A 3'UTR       24981863
chr2:175426036-175426037(-) m6A 3'UTR       24981863
chr2:175426091-175426092(-) m6A 3'UTR       24981863
chr2:175427217-175427218(-) m6A 3'UTR//intron       24284625//24981863//28052920
chr2:175430923-175430924(-) m6A 3'UTR//intron       24284625
chr2:175431819-175431820(-) m6A CDS//exon       27773535
chr2:175432602-175432603(-) m6A CDS//exon       24284625//24981863//27773535
chr2:175432691-175432692(-) m6A CDS//exon       -
chr2:175432707-175432708(-) m6A CDS//exon       24284625
chr2:175433358-175433359(-) m6A exon//intron       -
chr2:175433369-175433370(-) m6A exon//intron       -
chr2:175436369-175436370(-) m6A CDS//intron       -
chr2:175436420-175436421(-) m6A CDS       24284625//24209618
chr2:175436440-175436441(-) m6A CDS       24284625//24209618
chr2:175436533-175436534(-) m6A CDS       24284625//24209618//24981863//28052920//27371828
chr2:175436541-175436542(-) m6A CDS       24284625//24209618//24981863//28052920//27371828
chr2:175436666-175436667(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828
chr2:175436743-175436744(-) m6A CDS       24284625//24209618//24981863//28052920//27371828
chr2:175436858-175436859(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27371828
chr2:175436956-175436957(-) m6A CDS       24284625//26404942
chr2:175437032-175437033(-) m6A CDS       24284625//26404942//27371828//22575960
chr2:175437115-175437116(-) m6A CDS       24209618//27371828
chr2:175439525-175439526(-) m6A 3'UTR//intron       27371828
chr2:175440001-175440002(-) m6A CDS       24284625//25456834//27371828
chr2:175445903-175445904(-) m6A exon//intron       24284625//24209618//24981863//28052920
chr2:175446002-175446003(-) m6A exon//intron       -
chr2:175446039-175446040(-) m6A CDS//exon       -
chr2:175446083-175446084(-) m6A CDS//exon       -
chr2:175446136-175446137(-) m6A CDS//exon       -
chr2:175450325-175450326(-) m6A 5'UTR//exon       24981863
chr2:175462411-175462412(-) m6A 5'UTR//exon//intron       26404942
chr2:175541074-175541075(-) m6A exon//intron       24981863
chr2:175541118-175541119(-) m6A exon//intron       24981863//22608085
chr2:175541152-175541153(-) m6A exon//intron       24981863//22608085
chr2:175541226-175541227(-) m6A exon//intron       24981863
chr2:175541248-175541249(-) m6A exon//intron       24981863
chr2:175547574-175547575(-) m6A 5'UTR//exon       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate WIPF1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART16
Interactor2: WIPF1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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