Basic Information:

  VIRBase ID:  

VHID00360929

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:  MIMAT0003713          SEMA3D:  NM_152754     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART15	SEMA3D
miRBase Accession/Entrez ID	MIMAT0003713	223117
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	coll-2//Sema-Z2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SEMA3D	chr7:84713416(-) A-I      intronic chr7:84672628(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEMA3D	chr7:84628563-84628564(-) m6A 3'UTR       27773535//22608085 chr7:84628578-84628579(-) m6A 3'UTR       27773535//22608085 chr7:84628621-84628622(-) m6A 3'UTR       27773535//22608085 chr7:84628638-84628639(-) m6A 3'UTR       27773535//22608085 chr7:84628712-84628713(-) m6A 3'UTR//exon       27773535//22608085 chr7:84628789-84628790(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628800-84628801(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628858-84628859(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628866-84628867(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628893-84628894(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628918-84628919(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628945-84628946(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84629028-84629029(-) m6A CDS//exon       25456834//24981863//27773535//22608085 chr7:84816069-84816070(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEMA3D	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART15
Interactor2: SEMA3D

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg