Basic Information:

  VIRBase ID:  

VHID00360513

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:  MIMAT0003713          CCDC43:  NM_001099225     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART15	CCDC43
miRBase Accession/Entrez ID	MIMAT0003713	124808
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC43	chr17:42757522(-) A-I      intronic chr17:42757549(-) A-I      intronic chr17:42757506(-) A-I      intronic chr17:42757429(-) A-I      intronic chr17:42757524(-) A-I      intronic chr17:42762287(-) A-I      intronic chr17:42757490(-) A-I      intronic chr17:42762300(-) A-I      intronic chr17:42762313(-) A-I      intronic chr17:42757534(-) A-I      intronic chr17:42757528(-) A-I      intronic chr17:42758719(-) A-I      intronic chr17:42762413(-) A-I      intronic chr17:42762386(-) A-I      intronic chr17:42762381(-) A-I      intronic chr17:42762317(-) A-I      intronic chr17:42757451(-) A-I      intronic chr17:42757512(-) A-I      intronic chr17:42757516(-) A-I      intronic chr17:42758768(-) A-I      intronic chr17:42757523(-) A-I      intronic chr17:42757535(-) A-I      intronic chr17:42762309(-) A-I      intronic chr17:42762227(-) A-I      intronic chr17:42761965(-) A-I      intronic chr17:42761918(-) A-I      intronic chr17:42761849(-) A-I      intronic chr17:42757560(-) A-I      intronic chr17:42758743(-) A-I      intronic chr17:42757470(-) A-I      intronic chr17:42758657(-) A-I      intronic chr17:42765675(-) A-I      intronic chr17:42765794(-) A-I      intronic chr17:42757604(-) A-I      intronic chr17:42758613(-) A-I      intronic chr17:42764747(-) A-I      intronic chr17:42758622(-) A-I      intronic chr17:42758625(-) A-I      intronic chr17:42758637(-) A-I      intronic chr17:42758642(-) A-I      intronic chr17:42758648(-) A-I      intronic chr17:42758682(-) A-I      intronic chr17:42764741(-) A-I      intronic chr17:42757102(-) A-I      intronic chr17:42764876(-) A-I      intronic chr17:42764951(-) A-I      intronic chr17:42764975(-) A-I      intronic chr17:42765643(-) A-I      intronic chr17:42765663(-) A-I      intronic chr17:42757018(-) A-I      intronic chr17:42757048(-) A-I      intronic chr17:42757551(-) A-I      intronic chr17:42757068(-) A-I      intronic chr17:42757093(-) A-I      intronic chr17:42757096(-) A-I      intronic chr17:42757111(-) A-I      intronic chr17:42757175(-) A-I      intronic chr17:42757179(-) A-I      intronic chr17:42757224(-) A-I      intronic chr17:42757374(-) A-I      intronic chr17:42757418(-) A-I      intronic chr17:42757438(-) A-I      intronic chr17:42758617(-) A-I      intronic chr17:42764763(-) A-I      intronic chr17:42757434(-) A-I      intronic chr17:42765777(-) A-I      intronic chr17:42757526(-) A-I      intronic chr17:42761831(-) A-I      intronic chr17:42765720(-) A-I      intronic chr17:42761944(-) A-I      intronic chr17:42761982(-) A-I      intronic chr17:42764491(-) A-I      intronic chr17:42757629(-) A-I      intronic chr17:42757443(-) A-I      intronic chr17:42757072(-) A-I      intronic chr17:42757552(-) A-I      intronic chr17:42757180(-) A-I      intronic chr17:42757079(-) A-I      intronic chr17:42757611(-) A-I      intronic chr17:42757559(-) A-I      intronic chr17:42757027(-) A-I      intronic chr17:42758723(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC43	chr17:42750579-42750580(-) m6A 3'UTR       27773535//22608085 chr17:42750675-42750676(-) m6A 3'UTR       27773535//22608085 chr17:42750703-42750704(-) m6A 3'UTR       27773535//22608085 chr17:42750771-42750772(-) m6A 3'UTR       24284625//27773535//22608085 chr17:42750820-42750821(-) m6A 3'UTR       24284625//22608085 chr17:42751502-42751503(-) m6A intron       24981863//22608085 chr17:42751625-42751626(-) m6A intron       24981863//22608085 chr17:42751655-42751656(-) m6A intron       24981863 chr17:42755719-42755720(-) m6A 3'UTR//intron       24981863//27773535 chr17:42756175-42756176(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr17:42756191-42756192(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr17:42756249-42756250(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085 chr17:42756293-42756294(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr17:42756314-42756315(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr17:42756319-42756320(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr17:42756353-42756354(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr17:42756364-42756365(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr17:42756398-42756399(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr17:42757969-42757970(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22608085 chr17:42759137-42759138(-) m6A exon//intron       24209618//24981863//27773535 chr17:42759150-42759151(-) m6A exon//intron       24209618//24981863//27773535 chr17:42759189-42759190(-) m6A exon//intron       24209618//24981863//27773535//22608085 chr17:42759323-42759324(-) m6A exon//intron       24981863//27773535 chr17:42761272-42761273(-) m6A CDS//exon       24981863//27773535 chr17:42761322-42761323(-) m1A CDS//exon       26863196 chr17:42766960-42766961(-) m1A CDS//exon       26863196//26863410 chr17:42767014-42767015(-) m6A CDS//exon       25456834//24981863//27371828//22575960 chr17:42767134-42767135(-) m6A 5'UTR       25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC43	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART15
Interactor2: CCDC43

Evidence Support:

Prediction-Evidence	cRep//PITA
Support Database	RepTar//VmiReg