Detail Information

Basic Information:


  VIRBase ID:  

VHID00360004

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:           LPCAT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART15 LPCAT1
miRBase
Accession/Entrez ID		 MIMAT0003713 79888
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - AGPAT10//AGPAT9//AYTL2//lpcat//LPCAT-1//lysoPAFAT//PFAAP3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LPCAT1
chr5:1486807(-) A-I      intronic
chr5:1518548(-) A-I      intronic
chr5:1496304(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LPCAT1
chr5:1469667(-) C-T intron -    22484847
chr5:1496224(-) T-G intron -    22484847
chr5:1496304(-) A-G intron -    22484847
chr5:1496357(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LPCAT1
chr5:1456779-1456780(-) m6A 3'UTR       27773535
chr5:1456815-1456816(-) m6A 3'UTR       27773535
chr5:1456833-1456834(-) m6A 3'UTR       27773535
chr5:1456885-1456886(-) m6A 3'UTR       27773535
chr5:1456898-1456899(-) m6A 3'UTR       27773535
chr5:1456908-1456909(-) m6A 3'UTR       27773535
chr5:1456961-1456962(-) m6A 3'UTR       27773535
chr5:1457014-1457015(-) m6A 3'UTR       27773535
chr5:1457019-1457020(-) m6A 3'UTR       27773535
chr5:1457103-1457104(-) m6A 3'UTR       27773535
chr5:1457149-1457150(-) m6A 3'UTR       27773535
chr5:1461507-1461508(-) m6A 3'UTR       24284625//25456834//24981863
chr5:1461562-1461563(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//28052920//27371828//22608085
chr5:1461590-1461591(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//28052920//27371828//22608085
chr5:1461633-1461634(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:1461672-1461673(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr5:1461709-1461710(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1461725-1461726(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1461753-1461754(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1461830-1461831(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1461922-1461923(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1461945-1461946(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462070-1462071(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462104-1462105(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462123-1462124(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462137-1462138(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462189-1462190(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462199-1462200(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:1462384-1462385(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr5:1462415-1462416(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr5:1462605-1462606(-) m6A 3'UTR//exon       24284625
chr5:1463526-1463527(-) m6A 3'UTR//exon       24284625//27773536
chr5:1463568-1463569(-) Gm 3'UTR//exon       -
chr5:1463585-1463586(-) m6A 3'UTR//exon       24284625//24209618//24981863//27371828//22575960//22608085
chr5:1463725-1463726(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr5:1463763-1463764(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr5:1463808-1463809(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr5:1463860-1463861(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:1463884-1463885(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:1467326-1467327(-) m6A exon//intron       24284625//27371828
chr5:1467373-1467374(-) m6A exon//intron       24284625
chr5:1467421-1467422(-) m6A exon//intron       24284625
chr5:1470962-1470963(-) m6A CDS       24284625
chr5:1470969-1470970(-) m6A CDS       24284625
chr5:1471019-1471020(-) m6A CDS       24284625//27371828
chr5:1474093-1474094(-) m6A CDS       24284625//27371828
chr5:1474192-1474193(-) m6A CDS       24284625
chr5:1474218-1474219(-) m6A CDS       24284625
chr5:1474697-1474698(-) Y CDS       25219674
chr5:1476300-1476301(-) Tm intron       -
chr5:1489893-1489894(-) Gm CDS//exon       -
chr5:1495020-1495021(-) m6A CDS//exon       24284625
chr5:1501604-1501605(-) m6A CDS//exon       24284625
chr5:1521464-1521465(-) m6A exon//intron       24284625
chr5:1521491-1521492(-) m6A exon//intron       24284625
chr5:1521501-1521502(-) m6A exon//intron       24284625
chr5:1523870-1523871(-) m6A CDS       27773536
chr5:1523938-1523939(-) m6A CDS       27773536//22575960
chr5:1524034-1524035(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LPCAT1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART15
Interactor2: LPCAT1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...