Basic Information:

  VIRBase ID:  

VHID00359002

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:  MIMAT0003713          CSDC2:  NM_014460     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART15	CSDC2
miRBase Accession/Entrez ID	MIMAT0003713	27254
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ347H13.2//PIPPIN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CSDC2	chr22:41962510(+) A-I      intronic chr22:41962556(+) A-I      intronic chr22:41962547(+) A-I      intronic chr22:41962541(+) A-I      intronic chr22:41962567(+) A-I      intronic chr22:41962576(+) A-I      intronic chr22:41962511(+) A-I      intronic chr22:41969200(+) A-I      intronic chr22:41969179(+) A-I      intronic chr22:41967215(+) A-I      intronic chr22:41964391(+) A-I      intronic chr22:41964388(+) A-I      intronic chr22:41962748(+) A-I      intronic chr22:41962746(+) A-I      intronic chr22:41960908(+) A-I      intronic chr22:41960984(+) A-I      intronic chr22:41970326(+) A-I      intronic chr22:41964187(+) A-I      intronic chr22:41969093(+) A-I      intronic chr22:41964241(+) A-I      intronic chr22:41969094(+) A-I      intronic chr22:41959820(+) A-I      intronic chr22:41968954(+) A-I      intronic chr22:41969019(+) A-I      intronic chr22:41969287(+) A-I      intronic chr22:41970409(+) A-I      intronic chr22:41967123(+) A-I      intronic chr22:41962327(+) A-I      intronic chr22:41968983(+) A-I      intronic chr22:41970387(+) A-I      intronic chr22:41970396(+) A-I      intronic chr22:41968984(+) A-I      intronic chr22:41969239(+) A-I      intronic chr22:41966597(+) A-I      intronic chr22:41969386(+) A-I      intronic chr22:41961005(+) A-I      intronic chr22:41968992(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CSDC2	chr22:41957094-41957095(+) m6A 5'UTR       25456834 chr22:41957133-41957134(+) m6A 5'UTR       25456834 chr22:41957167-41957168(+) m6A 5'UTR       25456834 chr22:41971180-41971181(+) m6A 3'UTR//intron       25456834 chr22:41971189-41971190(+) m6A 3'UTR//intron       25456834 chr22:41971366-41971367(+) m6A 3'UTR//intron       25456834 chr22:41971435-41971436(+) m6A 3'UTR//intron       25456834 chr22:41971764-41971765(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr22:41971808-41971809(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr22:41971833-41971834(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr22:41971857-41971858(+) m6A 3'UTR//intron       24209618//25456834//24981863 chr22:41972143-41972144(+) m6A 3'UTR//intron       25456834 chr22:41972154-41972155(+) m6A 3'UTR//intron       25456834 chr22:41972172-41972173(+) m6A 3'UTR//intron       25456834 chr22:41972248-41972249(+) m6A 3'UTR//intron       25456834 chr22:41972621-41972622(+) m6A 3'UTR//intron       24981863 chr22:41972651-41972652(+) m6A 3'UTR//intron       24981863 chr22:41973283-41973284(+) m6A CDS       24981863//27371828 chr22:41973386-41973387(+) m6A CDS       27371828//27773536 chr22:41973511-41973512(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CSDC2	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART15
Interactor2: CSDC2

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg