Basic Information:

  VIRBase ID:  

VHID00356911

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:  MIMAT0003713          DDX6:  NM_004397     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART15	DDX6
miRBase Accession/Entrez ID	MIMAT0003713	1656
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HLR2//IDDILF//P54//RCK//Rck/p54

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DDX6	chr11:118658904(-) A-I      intronic chr11:118659622(-) A-I      intronic chr11:118659627(-) A-I      intronic chr11:118631763(-) A-I      intronic chr11:118654345(-) A-I      intronic chr11:118659983(-) A-I      intronic chr11:118647410(-) A-I      intronic chr11:118647394(-) A-I      intronic chr11:118654399(-) A-I      intronic chr11:118654403(-) A-I      intronic chr11:118624681(-) A-I      intronic chr11:118647376(-) A-I      intronic chr11:118654447(-) A-I      intronic chr11:118624761(-) A-I      intronic chr11:118658888(-) A-I      intronic chr11:118658903(-) A-I      intronic chr11:118623916(-) A-I      intronic chr11:118623876(-) A-I      intronic chr11:118659609(-) A-I      intronic chr11:118654320(-) A-I      intronic chr11:118653531(-) A-I      intronic chr11:118638523(-) A-I      intronic chr11:118624641(-) A-I      intronic chr11:118654459(-) A-I      intronic chr11:118640961(-) A-I      intronic chr11:118654453(-) A-I      intronic chr11:118654463(-) A-I      intronic chr11:118654469(-) A-I      intronic chr11:118640964(-) A-I      intronic chr11:118651151(-) A-I      intronic chr11:118654477(-) A-I      intronic chr11:118641028(-) A-I      intronic chr11:118654485(-) A-I      intronic chr11:118641364(-) A-I      intronic chr11:118654490(-) A-I      intronic chr11:118654595(-) A-I      intronic chr11:118654721(-) A-I      intronic chr11:118641508(-) A-I      intronic chr11:118623814(-) A-I      intronic chr11:118656122(-) A-I      intronic chr11:118656141(-) A-I      intronic chr11:118656165(-) A-I      intronic chr11:118658291(-) A-I      intronic chr11:118658763(-) A-I      intronic chr11:118658925(-) A-I      intronic chr11:118641369(-) A-I      intronic chr11:118658929(-) A-I      intronic chr11:118659142(-) A-I      intronic chr11:118641433(-) A-I      intronic chr11:118641479(-) A-I      intronic chr11:118623918(-) A-I      intronic chr11:118641482(-) A-I      intronic chr11:118641483(-) A-I      intronic chr11:118623952(-) A-I      intronic chr11:118659231(-) A-I      intronic chr11:118659271(-) A-I      intronic chr11:118646589(-) A-I      intronic chr11:118659280(-) A-I      intronic chr11:118659300(-) A-I      intronic chr11:118637398(-) A-I      intronic chr11:118646619(-) A-I      intronic chr11:118647354(-) A-I      intronic chr11:118647430(-) A-I      intronic chr11:118659302(-) A-I      intronic chr11:118647432(-) A-I      intronic chr11:118659325(-) A-I      intronic chr11:118647516(-) A-I      intronic chr11:118647527(-) A-I      intronic chr11:118659495(-) A-I      intronic chr11:118659496(-) A-I      intronic chr11:118659567(-) A-I      intronic chr11:118653501(-) A-I      intronic chr11:118659608(-) A-I      intronic chr11:118649638(-) A-I      intronic chr11:118624127(-) A-I      intronic chr11:118659632(-) A-I      intronic chr11:118659649(-) A-I      intronic chr11:118659900(-) A-I      intronic chr11:118650613(-) A-I      intronic chr11:118659917(-) A-I      intronic chr11:118659933(-) A-I      intronic chr11:118660024(-) A-I      intronic chr11:118654761(-) A-I      intronic chr11:118660033(-) A-I      intronic chr11:118660059(-) A-I      intronic chr11:118650620(-) A-I      intronic chr11:118660060(-) A-I      intronic chr11:118660066(-) A-I      intronic chr11:118650621(-) A-I      intronic chr11:118631136(-) A-I      intronic chr11:118650717(-) A-I      intronic chr11:118650742(-) A-I      intronic chr11:118650743(-) A-I      intronic chr11:118650773(-) A-I      intronic chr11:118650818(-) A-I      intronic chr11:118651116(-) A-I      intronic chr11:118637759(-) A-I      intronic chr11:118651190(-) A-I      intronic chr11:118651244(-) A-I      intronic chr11:118623957(-) A-I      intronic chr11:118651272(-) A-I      intronic chr11:118636890(-) A-I      intronic chr11:118651315(-) A-I      intronic chr11:118652407(-) A-I      intronic chr11:118624106(-) A-I      intronic chr11:118652474(-) A-I      intronic chr11:118651163(-) A-I      intronic chr11:118652518(-) A-I      intronic chr11:118624193(-) A-I      intronic chr11:118624222(-) A-I      intronic chr11:118624226(-) A-I      intronic chr11:118652525(-) A-I      intronic chr11:118624231(-) A-I      intronic chr11:118624275(-) A-I      intronic chr11:118624586(-) A-I      intronic chr11:118624592(-) A-I      intronic chr11:118624638(-) A-I      intronic chr11:118624661(-) A-I      intronic chr11:118623894(-) A-I      intronic chr11:118624109(-) A-I      intronic chr11:118652580(-) A-I      intronic chr11:118624677(-) A-I      intronic chr11:118624683(-) A-I      intronic chr11:118624693(-) A-I      intronic chr11:118624697(-) A-I      intronic chr11:118624744(-) A-I      intronic chr11:118624745(-) A-I      intronic chr11:118624750(-) A-I      intronic chr11:118624760(-) A-I      intronic chr11:118653442(-) A-I      intronic chr11:118623898(-) A-I      intronic chr11:118624763(-) A-I      intronic chr11:118653492(-) A-I      intronic chr11:118653502(-) A-I      intronic chr11:118624771(-) A-I      intronic chr11:118623875(-) A-I      intronic chr11:118624874(-) A-I      intronic chr11:118624894(-) A-I      intronic chr11:118653508(-) A-I      intronic chr11:118646622(-) A-I      intronic chr11:118652488(-) A-I      intronic chr11:118653527(-) A-I      intronic chr11:118624895(-) A-I      intronic chr11:118624934(-) A-I      intronic chr11:118624967(-) A-I      intronic chr11:118653532(-) A-I      intronic chr11:118624973(-) A-I      intronic chr11:118654125(-) A-I      intronic chr11:118624984(-) A-I      intronic chr11:118654140(-) A-I      intronic chr11:118625010(-) A-I      intronic chr11:118625022(-) A-I      intronic chr11:118624121(-) A-I      intronic chr11:118646801(-) A-I      intronic chr11:118653585(-) A-I      intronic chr11:118654362(-) A-I      intronic chr11:118625069(-) A-I      intronic chr11:118652537(-) A-I      intronic chr11:118625070(-) A-I      intronic chr11:118654363(-) A-I      intronic chr11:118654389(-) A-I      intronic chr11:118625107(-) A-I      intronic chr11:118654428(-) A-I      intronic chr11:118652836(-) A-I      intronic chr11:118631088(-) A-I      intronic chr11:118631100(-) A-I      intronic chr11:118631104(-) A-I      intronic chr11:118631109(-) A-I      intronic chr11:118631122(-) A-I      intronic chr11:118631133(-) A-I      intronic chr11:118635326(-) A-I      intronic chr11:118635412(-) A-I      intronic chr11:118635436(-) A-I      intronic chr11:118636320(-) A-I      intronic chr11:118636567(-) A-I      intronic chr11:118636576(-) A-I      intronic chr11:118636697(-) A-I      intronic chr11:118623902(-) A-I      intronic chr11:118636716(-) A-I      intronic chr11:118636733(-) A-I      intronic chr11:118636900(-) A-I      intronic chr11:118637018(-) A-I      intronic chr11:118637066(-) A-I      intronic chr11:118637090(-) A-I      intronic chr11:118637690(-) A-I      intronic chr11:118637331(-) A-I      intronic chr11:118637399(-) A-I      intronic chr11:118637450(-) A-I      intronic chr11:118637488(-) A-I      intronic chr11:118637514(-) A-I      intronic chr11:118623917(-) A-I      intronic chr11:118637538(-) A-I      intronic chr11:118624888(-) A-I      intronic chr11:118638337(-) A-I      intronic chr11:118638354(-) A-I      intronic chr11:118638408(-) A-I      intronic chr11:118639783(-) A-I      intronic chr11:118639808(-) A-I      intronic chr11:118640737(-) A-I      intronic chr11:118640796(-) A-I      intronic chr11:118640808(-) A-I      intronic chr11:118647420(-) A-I      intronic chr11:118647393(-) A-I      intronic chr11:118623555(-) A-I      intronic chr11:118658298(-) A-I      intronic chr11:118631114(-) A-I      intronic chr11:118652561(-) A-I      intronic chr11:118637789(-) A-I      intronic chr11:118650608(-) A-I      intronic chr11:118636916(-) A-I      intronic chr11:118632371(-) A-I      intronic chr11:118658776(-) A-I      intronic chr11:118637566(-) A-I      intronic chr11:118653536(-) A-I      intronic chr11:118638505(-) A-I      intronic chr11:118637559(-) A-I      intronic chr11:118637814(-) A-I      intronic chr11:118654141(-) A-I      intronic chr11:118636226(-) A-I      intronic chr11:118636563(-) A-I      intronic chr11:118651123(-) A-I      intronic chr11:118636240(-) A-I      intronic chr11:118652554(-) A-I      intronic chr11:118637551(-) A-I      intronic chr11:118624966(-) A-I      intronic chr11:118655634(-) A-I      intronic chr11:118638560(-) A-I      intronic chr11:118637530(-) A-I      intronic chr11:118653611(-) A-I      intronic chr11:118637533(-) A-I      intronic chr11:118652393(-) A-I      intronic chr11:118637791(-) A-I      intronic chr11:118638591(-) A-I      intronic chr11:118624228(-) A-I      intronic chr11:118658973(-) A-I      intronic chr11:118636732(-) A-I      intronic chr11:118640956(-) A-I      intronic chr11:118638590(-) A-I      intronic chr11:118653426(-) A-I      intronic chr11:118625012(-) A-I      intronic chr11:118636696(-) A-I      intronic chr11:118638568(-) A-I      intronic chr11:118658031(-) A-I      intronic chr11:118636719(-) A-I      intronic chr11:118652555(-) A-I      intronic chr11:118641496(-) A-I      intronic chr11:118624319(-) A-I      intronic chr11:118658976(-) A-I      intronic chr11:118624187(-) A-I      intronic chr11:118653533(-) A-I      intronic chr11:118645406(-) A-I      intronic chr11:118655347(-) A-I      intronic chr11:118645350(-) A-I      intronic chr11:118652392(-) A-I      intronic chr11:118637417(-) A-I      intronic chr11:118655631(-) A-I      intronic chr11:118619352(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DDX6	chr11:118638505(-) A-I intron -    15342557 chr11:118638560(-) A-I intron -    15342557 chr11:118638568(-) A-I intron -    15342557 chr11:118638590(-) A-I intron -    15342557 chr11:118638591(-) A-I intron -    15342557 chr11:118619352(-) A-I exon 3'UTR    22327324 chr11:118621775(-) A-I exon 3'UTR    22327324 chr11:118621699(-) A-I exon 3'UTR    21960545 chr11:118646589(-) A-I intron -    21960545 chr11:118620067(-) C-T exon 3'UTR    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DDX6	chr11:118620548-118620549(-) m6A 3'UTR       24981863 chr11:118620598-118620599(-) m6A 3'UTR       24981863//26404942 chr11:118620617-118620618(-) m6A 3'UTR       24284625//24981863//26404942 chr11:118620629-118620630(-) m6A 3'UTR       24284625//24981863//26404942 chr11:118620643-118620644(-) m6A 3'UTR       24284625//24981863//28052920//26404942 chr11:118620677-118620678(-) m6A 3'UTR       24284625//24981863//28052920//26404942 chr11:118620740-118620741(-) m6A 3'UTR       24284625//24981863//28052920//27773535 chr11:118620795-118620796(-) m6A 3'UTR       27773535 chr11:118621900-118621901(-) m6A 3'UTR       24981863 chr11:118621947-118621948(-) m6A 3'UTR       24981863//26404942 chr11:118621956-118621957(-) m6A 3'UTR       24981863//26404942 chr11:118622031-118622032(-) m6A 3'UTR       24981863 chr11:118622156-118622157(-) m6A 3'UTR//exon       27773535 chr11:118622174-118622175(-) m6A 3'UTR//exon       27773535 chr11:118622317-118622318(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr11:118622341-118622342(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr11:118622478-118622479(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118622505-118622506(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118622539-118622540(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118622592-118622593(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118622684-118622685(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118622700-118622701(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr11:118622709-118622710(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr11:118630685-118630686(-) m6A CDS//intron       22575960 chr11:118635955-118635956(-) m6A CDS//intron       27773535 chr11:118635995-118635996(-) m6A CDS//intron       27773535 chr11:118636037-118636038(-) m6A CDS       27773535 chr11:118638367-118638368(-) m6A exon//intron       27773535 chr11:118656732-118656733(-) m6A exon//intron       24981863 chr11:118656820-118656821(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr11:118656832-118656833(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr11:118656848-118656849(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:118656882-118656883(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr11:118656937-118656938(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr11:118656944-118656945(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr11:118656964-118656965(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr11:118656979-118656980(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr11:118657030-118657031(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr11:118657052-118657053(-) Y 5'UTR//exon       25219674 chr11:118657067-118657068(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:118657085-118657086(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr11:118657118-118657119(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr11:118657277-118657278(-) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr11:118660741-118660742(-) m6A exon//intron       27773535 chr11:118660785-118660786(-) m6A exon//intron       27773535 chr11:118660803-118660804(-) m6A exon//intron       27773535 chr11:118661589-118661590(-) m6A 5'UTR//intron       24209618//24981863 chr11:118661626-118661627(-) m6A 5'UTR//intron       24209618//24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DDX6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART15
Interactor2: DDX6

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg