Basic Information:

  VIRBase ID:  

VHID00356774

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART15:  MIMAT0003713          CALU:  NR_074086     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART15	CALU
miRBase Accession/Entrez ID	MIMAT0003713	813
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CALU	chr7:128406164(+) A-I      intronic chr7:128406531(+) A-I      intronic chr7:128406622(+) A-I      intronic chr7:128386649(+) A-I      intronic chr7:128406050(+) A-I      intronic chr7:128406798(+) A-I      intronic chr7:128406072(+) A-I      intronic chr7:128403510(+) A-I      intronic chr7:128403505(+) A-I      intronic chr7:128403497(+) A-I      intronic chr7:128403491(+) A-I      intronic chr7:128403452(+) A-I      intronic chr7:128402942(+) A-I      intronic chr7:128402866(+) A-I      intronic chr7:128402838(+) A-I      intronic chr7:128402764(+) A-I      intronic chr7:128402760(+) A-I      intronic chr7:128392948(+) A-I      intronic chr7:128392936(+) A-I      intronic chr7:128392884(+) A-I      intronic chr7:128392839(+) A-I      intronic chr7:128392838(+) A-I      intronic chr7:128392778(+) A-I      intronic chr7:128391670(+) A-I      intronic chr7:128391262(+) A-I      intronic chr7:128390242(+) A-I      intronic chr7:128390237(+) A-I      intronic chr7:128390188(+) A-I      intronic chr7:128390167(+) A-I      intronic chr7:128390135(+) A-I      intronic chr7:128387102(+) A-I      intronic chr7:128386940(+) A-I      intronic chr7:128386938(+) A-I      intronic chr7:128386903(+) A-I      intronic chr7:128386647(+) A-I      intronic chr7:128386637(+) A-I      intronic chr7:128386473(+) A-I      intronic chr7:128385645(+) A-I      intronic chr7:128385622(+) A-I      intronic chr7:128385538(+) A-I      intronic chr7:128385424(+) A-I      intronic chr7:128384166(+) A-I      intronic chr7:128384153(+) A-I      intronic chr7:128383750(+) A-I      intronic chr7:128380984(+) A-I      intronic chr7:128406692(+) A-I      intronic chr7:128406666(+) A-I      intronic chr7:128406612(+) A-I      intronic chr7:128406583(+) A-I      intronic chr7:128402862(+) A-I      intronic chr7:128404395(+) A-I      intronic chr7:128404489(+) A-I      intronic chr7:128405076(+) A-I      intronic chr7:128405157(+) A-I      intronic chr7:128405204(+) A-I      intronic chr7:128405342(+) A-I      intronic chr7:128406111(+) A-I      intronic chr7:128409667(+) A-I      3'UTR chr7:128403336(+) A-I      intronic chr7:128391073(+) A-I      intronic chr7:128393013(+) A-I      intronic chr7:128392758(+) A-I      intronic chr7:128385544(+) A-I      intronic chr7:128384005(+) A-I      intronic chr7:128392868(+) A-I      intronic chr7:128390093(+) A-I      intronic chr7:128400699(+) A-I      intronic chr7:128391599(+) A-I      intronic chr7:128402906(+) A-I      intronic chr7:128391638(+) A-I      intronic chr7:128386401(+) A-I      intronic chr7:128392904(+) A-I      intronic chr7:128405121(+) A-I      intronic chr7:128405492(+) A-I      intronic chr7:128385548(+) A-I      intronic chr7:128399996(+) A-I      intronic chr7:128406110(+) A-I      intronic chr7:128392809(+) A-I      intronic chr7:128406064(+) A-I      intronic chr7:128405007(+) A-I      intronic chr7:128402850(+) A-I      intronic chr7:128404296(+) A-I      intronic chr7:128404321(+) A-I      intronic chr7:128403418(+) A-I      intronic chr7:128385585(+) A-I      intronic chr7:128385608(+) A-I      intronic chr7:128406151(+) A-I      intronic chr7:128403424(+) A-I      intronic chr7:128402995(+) A-I      intronic chr7:128386486(+) A-I      intronic chr7:128405449(+) A-I      intronic chr7:128406663(+) A-I      intronic chr7:128404372(+) A-I      intronic chr7:128405354(+) A-I      intronic chr7:128392832(+) A-I      intronic chr7:128383694(+) A-I      intronic chr7:128383732(+) A-I      intronic chr7:128386758(+) A-I      intronic chr7:128400089(+) A-I      intronic chr7:128386655(+) A-I      intronic chr7:128393005(+) A-I      intronic chr7:128386474(+) A-I      intronic chr7:128406030(+) A-I      intronic chr7:128384101(+) A-I      intronic chr7:128405368(+) A-I      intronic chr7:128404421(+) A-I      intronic chr7:128384004(+) A-I      intronic chr7:128392939(+) A-I      intronic chr7:128391088(+) A-I      intronic chr7:128386780(+) A-I      intronic chr7:128383689(+) A-I      intronic chr7:128404213(+) A-I      intronic chr7:128402814(+) A-I      intronic chr7:128391660(+) A-I      intronic chr7:128383716(+) A-I      intronic chr7:128383832(+) A-I      intronic chr7:128405125(+) A-I      intronic chr7:128404414(+) A-I      intronic chr7:128390026(+) A-I      intronic chr7:128403427(+) A-I      intronic chr7:128383820(+) A-I      intronic chr7:128406137(+) A-I      intronic chr7:128393006(+) A-I      intronic chr7:128386608(+) A-I      intronic chr7:128392922(+) A-I      intronic chr7:128405048(+) A-I      intronic chr7:128385532(+) A-I      intronic chr7:128404350(+) A-I      intronic chr7:128391283(+) A-I      intronic chr7:128404432(+) A-I      intronic chr7:128404437(+) A-I      intronic chr7:128405306(+) A-I      intronic chr7:128386329(+) A-I      intronic chr7:128405458(+) A-I      intronic chr7:128403422(+) A-I      intronic chr7:128403397(+) A-I      intronic chr7:128400708(+) A-I      intronic chr7:128390161(+) A-I      intronic chr7:128386351(+) A-I      intronic chr7:128386274(+) A-I      intronic chr7:128393018(+) A-I      intronic chr7:128384156(+) A-I      intronic chr7:128404342(+) A-I      intronic chr7:128402998(+) A-I      intronic chr7:128392878(+) A-I      intronic chr7:128406216(+) A-I      intronic chr7:128402860(+) A-I      intronic chr7:128392808(+) A-I      intronic chr7:128402901(+) A-I      intronic chr7:128391292(+) A-I      intronic chr7:128392789(+) A-I      intronic chr7:128402798(+) A-I      intronic chr7:128403436(+) A-I      intronic chr7:128391195(+) A-I      intronic chr7:128402930(+) A-I      intronic chr7:128393036(+) A-I      intronic chr7:128406762(+) A-I      intronic chr7:128403423(+) A-I      intronic chr7:128391221(+) A-I      intronic chr7:128404467(+) A-I      intronic chr7:128403464(+) A-I      intronic chr7:128406199(+) A-I      intronic chr7:128383626(+) A-I      intronic chr7:128400074(+) A-I      intronic chr7:128386962(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CALU	chr7:128392868(+) A-I intron -    15258596 chr7:128392873(+) A-I intron -    15258596 chr7:128392878(+) A-I intron -    15258596 chr7:128393006(+) A-I intron -    15258596 chr7:128393013(+) A-I intron -    15258596 chr7:128393018(+) A-I intron -    15258596 chr7:128384005(+) A-I intron -    22327324 chr7:128405306(+) A-I intron -    22327324 chr7:128391674(+) A-I intron -    21960545 chr7:128406110(+) A-I intron -    21960545 chr7:128406151(+) A-I intron -    21960545 chr7:128385418(+) A-I intron -    21960545 chr7:128390026(+) A-I intron -    21960545 chr7:128405007(+) A-I intron -    21960545 chr7:128405048(+) A-I intron -    21960545 chr7:128383694(+) A-G intron -    22484847 chr7:128383732(+) A-G intron -    22484847 chr7:128383991(+) A-G intron -    22484847 chr7:128384004(+) A-G intron -    22484847 chr7:128384005(+) A-G intron -    22484847 chr7:128384100(+) A-G intron -    22484847 chr7:128384101(+) A-G intron -    22484847 chr7:128384140(+) A-G intron -    22484847 chr7:128385419(+) A-G intron -    22484847 chr7:128385532(+) A-G intron -    22484847 chr7:128385562(+) A-G intron -    22484847 chr7:128386274(+) A-G intron -    22484847 chr7:128386401(+) A-G intron -    22484847 chr7:128386608(+) A-G intron -    22484847 chr7:128390003(+) A-G intron -    22484847 chr7:128390161(+) A-G intron -    22484847 chr7:128391089(+) A-G intron -    22484847 chr7:128391094(+) A-G intron -    22484847 chr7:128391195(+) A-G intron -    22484847 chr7:128391221(+) A-G intron -    22484847 chr7:128392808(+) A-G intron -    22484847 chr7:128392809(+) A-G intron -    22484847 chr7:128392832(+) A-G intron -    22484847 chr7:128392868(+) A-G intron -    22484847 chr7:128392873(+) A-G intron -    22484847 chr7:128392878(+) A-G intron -    22484847 chr7:128392904(+) A-G intron -    22484847 chr7:128392922(+) A-G intron -    22484847 chr7:128392939(+) A-G intron -    22484847 chr7:128393006(+) A-G intron -    22484847 chr7:128393013(+) A-G intron -    22484847 chr7:128402798(+) A-G intron -    22484847 chr7:128402814(+) A-G intron -    22484847 chr7:128402820(+) A-G intron -    22484847 chr7:128402860(+) A-G intron -    22484847 chr7:128402901(+) A-G intron -    22484847 chr7:128402902(+) A-G intron -    22484847 chr7:128402904(+) A-G intron -    22484847 chr7:128402906(+) A-G intron -    22484847 chr7:128402983(+) A-G intron -    22484847 chr7:128402998(+) A-G intron -    22484847 chr7:128403335(+) A-G intron -    22484847 chr7:128403407(+) A-G intron -    22484847 chr7:128403418(+) A-G intron -    22484847 chr7:128403421(+) A-G intron -    22484847 chr7:128403422(+) A-G intron -    22484847 chr7:128403423(+) A-G intron -    22484847 chr7:128403424(+) A-G intron -    22484847 chr7:128403425(+) A-G intron -    22484847 chr7:128403427(+) A-G intron -    22484847 chr7:128403464(+) A-G intron -    22484847 chr7:128404350(+) A-G intron -    22484847 chr7:128404372(+) A-G intron -    22484847 chr7:128404421(+) A-G intron -    22484847 chr7:128404432(+) A-G intron -    22484847 chr7:128404467(+) A-G intron -    22484847 chr7:128405007(+) A-G intron -    22484847 chr7:128405048(+) A-G intron -    22484847 chr7:128405306(+) A-G intron -    22484847 chr7:128405354(+) A-G intron -    22484847 chr7:128406064(+) A-G intron -    22484847 chr7:128406199(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CALU	chr7:128379391-128379392(+) m6A 5'UTR       24981863 chr7:128387907-128387908(+) m6A 5'UTR//intron       24981863//22608085 chr7:128387949-128387950(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr7:128387991-128387992(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr7:128388048-128388049(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr7:128388062-128388063(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr7:128388106-128388107(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085 chr7:128388126-128388127(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085 chr7:128388164-128388165(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085 chr7:128388184-128388185(+) m6A 5'UTR//intron       24284625//24209618//24981863//22608085 chr7:128388229-128388230(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr7:128388234-128388235(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr7:128388280-128388281(+) m6A 5'UTR//intron       24981863//22608085 chr7:128388311-128388312(+) m6A 5'UTR//intron       22608085 chr7:128388359-128388360(+) m6A 5'UTR//intron       22608085 chr7:128388370-128388371(+) m6A 5'UTR//intron       22608085 chr7:128388696-128388697(+) m6A CDS       27773535 chr7:128388713-128388714(+) m6A CDS       27773535 chr7:128388814-128388815(+) m6A CDS       24981863//26404942//27773535 chr7:128394377-128394378(+) m6A CDS//intron       24981863//26404942//27773535 chr7:128394427-128394428(+) Cm CDS//intron       - chr7:128394692-128394693(+) m6A CDS//intron       27773535 chr7:128398958-128398959(+) m6A CDS       24209618//24981863//26404942//27773535 chr7:128398999-128399000(+) m6A CDS       24209618//24981863//26404942//27773535 chr7:128399011-128399012(+) m6A CDS       24209618//24981863//26404942//27773535 chr7:128399848-128399849(+) m6A CDS       24209618//24981863//26404942//27773535//22575960 chr7:128407559-128407560(+) m6A CDS//intron       24209618//24981863//26404942//27773535//22575960//22608085 chr7:128407596-128407597(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr7:128407607-128407608(+) Am CDS//intron       - chr7:128407614-128407615(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr7:128407625-128407626(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr7:128407632-128407633(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr7:128407650-128407651(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128407698-128407699(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128407704-128407705(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409232-128409233(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409303-128409304(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409316-128409317(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409326-128409327(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409347-128409348(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409382-128409383(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409409-128409410(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:128409544-128409545(+) m6A 3'UTR//intron       26404942//27773535 chr7:128409695-128409696(+) m6A 3'UTR//intron       27773535 chr7:128410044-128410045(+) Y 3'UTR//intron       25219674 chr7:128410416-128410417(+) m6A 3'UTR//intron       26404942//27773535 chr7:128410464-128410465(+) m6A 3'UTR//intron       26404942//27773535 chr7:128410520-128410521(+) Am 3'UTR//intron       - chr7:128410531-128410532(+) m6A 3'UTR//intron       26404942//27773535 chr7:128410560-128410561(+) m6A 3'UTR//intron       24981863//26404942//27773535 chr7:128410714-128410715(+) m6A 3'UTR//intron       27773535 chr7:128410763-128410764(+) m6A 3'UTR//intron       27773535 chr7:128411136-128411137(+) m6A 3'UTR//intron       27773535 chr7:128411191-128411192(+) m6A 3'UTR//intron       27773535 chr7:128411248-128411249(+) Y 3'UTR//intron       26075521 chr7:128411272-128411273(+) m6A 3'UTR//intron       26404942 chr7:128411288-128411289(+) m6A 3'UTR//intron       26404942 chr7:128411377-128411378(+) m6A 3'UTR//intron       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CALU	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART15
Interactor2: CALU

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg