Basic Information:

  VIRBase ID:  

VHID00353725

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART14-3p:  MIMAT0003426          SERINC3:  NM_006811     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART14-3p	SERINC3
miRBase Accession/Entrez ID	MIMAT0003426	10955
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AIGP1//DIFF33//SBBI99//TDE//TDE1//TMS-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SERINC3	chr20:43138326(-) A-I      intronic chr20:43138330(-) A-I      intronic chr20:43144462(-) A-I      intronic chr20:43144475(-) A-I      intronic chr20:43144479(-) A-I      intronic chr20:43144515(-) A-I      intronic chr20:43145106(-) A-I      intronic chr20:43145131(-) A-I      intronic chr20:43131465(-) A-I      intronic chr20:43131075(-) A-I      intronic chr20:43131106(-) A-I      intronic chr20:43131434(-) A-I      intronic chr20:43137033(-) A-I      intronic chr20:43131441(-) A-I      intronic chr20:43140788(-) A-I      intronic chr20:43138421(-) A-I      intronic chr20:43135055(-) A-I      intronic chr20:43132165(-) A-I      intronic chr20:43132203(-) A-I      intronic chr20:43132206(-) A-I      intronic chr20:43132245(-) A-I      intronic chr20:43134402(-) A-I      intronic chr20:43134414(-) A-I      intronic chr20:43134416(-) A-I      intronic chr20:43134419(-) A-I      intronic chr20:43138302(-) A-I      intronic chr20:43125269(-) A-I      intronic chr20:43125255(-) A-I      intronic chr20:43131310(-) A-I      intronic chr20:43125243(-) A-I      intronic chr20:43145199(-) A-I      intronic chr20:43145168(-) A-I      intronic chr20:43145067(-) A-I      intronic chr20:43144821(-) A-I      intronic chr20:43144795(-) A-I      intronic chr20:43144585(-) A-I      intronic chr20:43144493(-) A-I      intronic chr20:43144492(-) A-I      intronic chr20:43144384(-) A-I      intronic chr20:43143938(-) A-I      intronic chr20:43134212(-) A-I      intronic chr20:43143912(-) A-I      intronic chr20:43143871(-) A-I      intronic chr20:43143280(-) A-I      intronic chr20:43143227(-) A-I      intronic chr20:43139782(-) A-I      intronic chr20:43139732(-) A-I      intronic chr20:43139730(-) A-I      intronic chr20:43139728(-) A-I      intronic chr20:43139725(-) A-I      intronic chr20:43139408(-) A-I      intronic chr20:43139389(-) A-I      intronic chr20:43139334(-) A-I      intronic chr20:43139261(-) A-I      intronic chr20:43138359(-) A-I      intronic chr20:43138353(-) A-I      intronic chr20:43138345(-) A-I      intronic chr20:43138341(-) A-I      intronic chr20:43138285(-) A-I      intronic chr20:43134087(-) A-I      intronic chr20:43132232(-) A-I      intronic chr20:43132046(-) A-I      intronic chr20:43131355(-) A-I      intronic chr20:43131167(-) A-I      intronic chr20:43131162(-) A-I      intronic chr20:43137102(-) A-I      intronic chr20:43130953(-) A-I      intronic chr20:43125295(-) A-I      intronic chr20:43137094(-) A-I      intronic chr20:43137091(-) A-I      intronic chr20:43136401(-) A-I      intronic chr20:43135179(-) A-I      intronic chr20:43135143(-) A-I      intronic chr20:43134876(-) A-I      intronic chr20:43134875(-) A-I      intronic chr20:43134859(-) A-I      intronic chr20:43134779(-) A-I      intronic chr20:43134716(-) A-I      intronic chr20:43134468(-) A-I      intronic chr20:43134417(-) A-I      intronic chr20:43134411(-) A-I      intronic chr20:43134336(-) A-I      intronic chr20:43136386(-) A-I      intronic chr20:43145146(-) A-I      intronic chr20:43134862(-) A-I      intronic chr20:43131415(-) A-I      intronic chr20:43143981(-) A-I      intronic chr20:43137075(-) A-I      intronic chr20:43144569(-) A-I      intronic chr20:43139623(-) A-I      intronic chr20:43139400(-) A-I      intronic chr20:43137124(-) A-I      intronic chr20:43145126(-) A-I      intronic chr20:43138379(-) A-I      intronic chr20:43138310(-) A-I      intronic chr20:43144469(-) A-I      intronic chr20:43139662(-) A-I      intronic chr20:43143943(-) A-I      intronic chr20:43134343(-) A-I      intronic chr20:43138342(-) A-I      intronic chr20:43144582(-) A-I      intronic chr20:43134459(-) A-I      intronic chr20:43136427(-) A-I      intronic chr20:43132045(-) A-I      intronic chr20:43144843(-) A-I      intronic chr20:43145142(-) A-I      intronic chr20:43145209(-) A-I      intronic chr20:43137055(-) A-I      intronic chr20:43139291(-) A-I      intronic chr20:43127026(-) A-I      3'UTR chr20:43126965(-) A-I      3'UTR chr20:43126959(-) A-I      3'UTR chr20:43131433(-) A-I      intronic chr20:43145207(-) A-I      intronic chr20:43139805(-) A-I      intronic chr20:43139827(-) A-I      intronic chr20:43131216(-) A-I      intronic chr20:43139344(-) A-I      intronic chr20:43134027(-) A-I      intronic chr20:43143987(-) A-I      intronic chr20:43145249(-) A-I      intronic chr20:43139287(-) A-I      intronic chr20:43144880(-) A-I      intronic chr20:43136948(-) A-I      intronic chr20:43131337(-) A-I      intronic chr20:43144407(-) A-I      intronic chr20:43134034(-) A-I      intronic chr20:43144929(-) A-I      intronic chr20:43143908(-) A-I      intronic chr20:43132044(-) A-I      intronic chr20:43139715(-) A-I      intronic chr20:43136388(-) A-I      intronic chr20:43144886(-) A-I      intronic chr20:43131497(-) A-I      intronic chr20:43131386(-) A-I      intronic chr20:43131376(-) A-I      intronic chr20:43143815(-) A-I      intronic chr20:43131392(-) A-I      intronic chr20:43131380(-) A-I      intronic chr20:43134101(-) A-I      intronic chr20:43143932(-) A-I      intronic chr20:43145177(-) A-I      intronic chr20:43137042(-) A-I      intronic chr20:43139220(-) A-I      intronic chr20:43131190(-) A-I      intronic chr20:43139719(-) A-I      intronic chr20:43138390(-) A-I      intronic chr20:43143211(-) A-I      intronic chr20:43134785(-) A-I      intronic chr20:43134000(-) A-I      intronic chr20:43139749(-) A-I      intronic chr20:43131411(-) A-I      intronic chr20:43132251(-) A-I      intronic chr20:43132172(-) A-I      intronic chr20:43144430(-) A-I      intronic chr20:43131504(-) A-I      intronic chr20:43145428(-) A-I      intronic chr20:43131336(-) A-I      intronic chr20:43136447(-) A-I      intronic chr20:43134319(-) A-I      intronic chr20:43139369(-) A-I      intronic chr20:43131414(-) A-I      intronic chr20:43134138(-) A-I      intronic chr20:43134492(-) A-I      intronic chr20:43145433(-) A-I      intronic chr20:43131407(-) A-I      intronic chr20:43134406(-) A-I      intronic chr20:43134423(-) A-I      intronic chr20:43125433(-) A-I      intronic chr20:43139366(-) A-I      intronic chr20:43136410(-) A-I      intronic chr20:43131451(-) A-I      intronic chr20:43143988(-) A-I      intronic chr20:43139723(-) A-I      intronic chr20:43145237(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SERINC3	chr20:43131164(-) A-I intron -    22327324 chr20:43139679(-) A-I intron -    22327324 chr20:43131533(-) A-I intron -    21960545 chr20:43131156(-) A-G intron -    22484847 chr20:43131164(-) A-G intron -    22484847 chr20:43131437(-) A-G intron -    22484847 chr20:43131497(-) A-G intron -    22484847 chr20:43136410(-) A-G intron -    22484847 chr20:43137121(-) C-G intron -    22484847 chr20:43139369(-) A-G intron -    22484847 chr20:43139679(-) A-G intron -    22484847 chr20:43139723(-) A-G intron -    22484847 chr20:43139737(-) A-G intron -    22484847 chr20:43139827(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SERINC3	chr20:43124876-43124877(-) m6A 3'UTR       27773535 chr20:43124909-43124910(-) m6A 3'UTR       27773535 chr20:43126343-43126344(-) m6A 3'UTR//intron       - chr20:43126378-43126379(-) m6A 3'UTR//intron       24981863 chr20:43126419-43126420(-) m6A 3'UTR//intron       27773535 chr20:43126430-43126431(-) m6A 3'UTR//intron       27773535 chr20:43126438-43126439(-) m6A 3'UTR//intron       27773535 chr20:43126512-43126513(-) m6A 3'UTR//intron       27773535 chr20:43127338-43127339(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127397-43127398(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127417-43127418(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127441-43127442(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127484-43127485(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127555-43127556(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127617-43127618(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127681-43127682(-) m6A 3'UTR//intron       24981863//27773535 chr20:43127765-43127766(-) m6A 3'UTR//intron       27773535 chr20:43128763-43128764(-) m6A 3'UTR//intron       24981863 chr20:43128881-43128882(-) m6A 3'UTR//intron       24284625//24981863 chr20:43128907-43128908(-) m6A 3'UTR       24284625//24981863 chr20:43128918-43128919(-) m6A 3'UTR       24284625//24981863 chr20:43128935-43128936(-) m6A 3'UTR       24284625//24981863 chr20:43128946-43128947(-) m6A CDS       24284625//24981863 chr20:43128980-43128981(-) m6A CDS       24284625//24981863 chr20:43129807-43129808(-) Gm CDS       - chr20:43132490-43132491(-) m6A CDS       26404942 chr20:43133445-43133446(-) m6A CDS       27773535 chr20:43133529-43133530(-) m6A CDS       27773535 chr20:43138557-43138558(-) m1A CDS       26863410

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART14-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	SERINC3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART14-3p
Interactor2: SERINC3

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.