Basic Information:

  VIRBase ID:  

VHID00351528

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART14-5p:  MIMAT0003425          GPR180:  NM_180989     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART14-5p	GPR180
miRBase Accession/Entrez ID	MIMAT0003425	160897
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ITR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPR180	chr13:95256444(+) A-I      intronic chr13:95256392(+) A-I      intronic chr13:95256387(+) A-I      intronic chr13:95275666(+) A-I      intronic chr13:95277225(+) A-I      intronic chr13:95256915(+) A-I      intronic chr13:95277220(+) A-I      intronic chr13:95275771(+) A-I      intronic chr13:95275783(+) A-I      intronic chr13:95277342(+) A-I      intronic chr13:95256947(+) A-I      intronic chr13:95256765(+) A-I      intronic chr13:95275883(+) A-I      intronic chr13:95276862(+) A-I      intronic chr13:95256909(+) A-I      intronic chr13:95256440(+) A-I      intronic chr13:95256709(+) A-I      intronic chr13:95256714(+) A-I      intronic chr13:95256500(+) A-I      intronic chr13:95275828(+) A-I      intronic chr13:95276978(+) A-I      intronic chr13:95257023(+) A-I      intronic chr13:95256756(+) A-I      intronic chr13:95276672(+) A-I      intronic chr13:95275668(+) A-I      intronic chr13:95256969(+) A-I      intronic chr13:95256508(+) A-I      intronic chr13:95256964(+) A-I      intronic chr13:95277057(+) A-I      intronic chr13:95274953(+) A-I      intronic chr13:95256654(+) A-I      intronic chr13:95277003(+) A-I      intronic chr13:95256397(+) A-I      intronic chr13:95276848(+) A-I      intronic chr13:95276963(+) A-I      intronic chr13:95257090(+) A-I      intronic chr13:95256708(+) A-I      intronic chr13:95256655(+) A-I      intronic chr13:95275884(+) A-I      intronic chr13:95256239(+) A-I      intronic chr13:95275879(+) A-I      intronic chr13:95277251(+) A-I      intronic chr13:95275740(+) A-I      intronic chr13:95277234(+) A-I      intronic chr13:95257072(+) A-I      intronic chr13:95275711(+) A-I      intronic chr13:95256490(+) A-I      intronic chr13:95256467(+) A-I      intronic chr13:95277070(+) A-I      intronic chr13:95256652(+) A-I      intronic chr13:95277058(+) A-I      intronic chr13:95276981(+) A-I      intronic chr13:95275754(+) A-I      intronic chr13:95276962(+) A-I      intronic chr13:95277037(+) A-I      intronic chr13:95277233(+) A-I      intronic chr13:95256764(+) A-I      intronic chr13:95275758(+) A-I      intronic chr13:95275827(+) A-I      intronic chr13:95275733(+) A-I      intronic chr13:95275682(+) A-I      intronic chr13:95256619(+) A-I      intronic chr13:95256894(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GPR180	chr13:95275682(+) A-I intron -    21960545   //22327324 chr13:95256508(+) A-G intron -    22484847 chr13:95256708(+) A-G intron -    22484847 chr13:95275682(+) A-G intron -    22484847 chr13:95275827(+) A-G intron -    22484847 chr13:95275828(+) A-G intron -    22484847 chr13:95276848(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPR180	chr13:95279322-95279323(+) m6A CDS       - chr13:95279400-95279401(+) m6A CDS       24284625//24981863//22608085 chr13:95279520-95279521(+) m6A 3'UTR       24981863//22608085 chr13:95279526-95279527(+) m6A 3'UTR       24981863//22608085 chr13:95279578-95279579(+) m6A 3'UTR       24981863//22608085 chr13:95279623-95279624(+) m6A 3'UTR       24981863//22608085 chr13:95279630-95279631(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPR180	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART14-5p
Interactor2: GPR180

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg