Basic Information:

  VIRBase ID:  

VHID00350206

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:  MIMAT0003424          SLC44A5:  NM_001320283     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-3p	SLC44A5
miRBase Accession/Entrez ID	MIMAT0003424	204962
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CTL5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC44A5	chr1:75954056(-) A-I      intronic chr1:75954108(-) A-I      intronic chr1:75954038(-) A-I      intronic chr1:75954064(-) A-I      intronic chr1:75954077(-) A-I      intronic chr1:75954093(-) A-I      intronic chr1:75954063(-) A-I      intronic chr1:75954039(-) A-I      intronic chr1:75954042(-) A-I      intronic chr1:75954044(-) A-I      intronic chr1:75954047(-) A-I      intronic chr1:75783976(-) A-I      intronic chr1:75989273(-) A-I      intronic chr1:76038605(-) A-I      intronic chr1:75976638(-) A-I      intronic chr1:75824982(-) A-I      intronic chr1:75763108(-) A-I      intronic chr1:75976706(-) A-I      intronic chr1:75787778(-) A-I      intronic chr1:76075987(-) A-I      intronic chr1:75763165(-) A-I      intronic chr1:76075969(-) A-I      intronic chr1:75763245(-) A-I      intronic chr1:76047514(-) A-I      intronic chr1:76038648(-) A-I      intronic chr1:76001354(-) A-I      intronic chr1:76038678(-) A-I      intronic chr1:75763143(-) A-I      intronic chr1:75763243(-) A-I      intronic chr1:75763055(-) A-I      intronic chr1:76030472(-) A-I      intronic chr1:75954805(-) A-I      intronic chr1:76038761(-) A-I      intronic chr1:76035065(-) A-I      intronic chr1:75825279(-) A-I      intronic chr1:76076643(-) A-I      intronic chr1:75972752(-) A-I      intronic chr1:75762061(-) A-I      intronic chr1:75989280(-) A-I      intronic chr1:76069414(-) A-I      intronic chr1:75763166(-) A-I      intronic chr1:76038696(-) A-I      intronic chr1:76012101(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC44A5	chr1:75762061(-) A-I intron -    15342557 chr1:75763055(-) A-I intron -    15342557 chr1:75763108(-) A-I intron -    15342557 chr1:75763143(-) A-I intron -    15342557 chr1:75763165(-) A-I intron -    15342557 chr1:75763166(-) A-I intron -    15342557 chr1:75763243(-) A-I intron -    15342557 chr1:75763245(-) A-I intron -    15342557

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC44A5	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-3p
Interactor2: SLC44A5

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.