Basic Information:

  VIRBase ID:  

VHID00350111

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:  MIMAT0003424          RASEF:  NM_152573     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-3p	RASEF
miRBase Accession/Entrez ID	MIMAT0003424	158158
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RAB45

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RASEF	chr9:85663927(-) A-I      intronic chr9:85655843(-) A-I      intronic chr9:85655914(-) A-I      intronic chr9:85655873(-) A-I      intronic chr9:85655868(-) A-I      intronic chr9:85663822(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RASEF	chr9:85641375(-) A-I intron -    21960545 chr9:85641460(-) A-I intron -    21960545 chr9:85644472(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RASEF	chr9:85595655-85595656(-) Y 3'UTR       26075521 chr9:85597378-85597379(-) m6A 3'UTR       24981863//22608085 chr9:85597435-85597436(-) m6A 3'UTR       24981863//22608085 chr9:85597459-85597460(-) m6A 3'UTR       24981863//22608085 chr9:85597465-85597466(-) m6A 3'UTR       24981863//22608085 chr9:85597583-85597584(-) m6A 3'UTR       24981863//22608085 chr9:85627417-85627418(-) m6A CDS       24981863 chr9:85630763-85630764(-) m6A CDS       24981863 chr9:85637261-85637262(-) m6A CDS       24981863 chr9:85637268-85637269(-) m6A CDS       24981863 chr9:85637332-85637333(-) m6A CDS       24981863 chr9:85640733-85640734(-) m6A CDS       24981863 chr9:85670356-85670357(-) m6A 3'UTR//intron       24981863 chr9:85670456-85670457(-) m6A 3'UTR//intron       24981863 chr9:85670494-85670495(-) m6A CDS//intron       24981863 chr9:85670503-85670504(-) m6A CDS//intron       24981863 chr9:85670576-85670577(-) m6A CDS//intron       27773536 chr9:85677487-85677488(-) m6A CDS       27773536 chr9:85677537-85677538(-) m6A CDS       27773536//22608085 chr9:85677714-85677715(-) m6A CDS       24981863//27773536 chr9:85677884-85677885(-) m6A 5'UTR       25456834//24981863//27773536//22608085 chr9:85677902-85677903(-) m6A 5'UTR       25456834//24981863//27773536//22608085 chr9:85677975-85677976(-) m6A 5'UTR       24981863//27773536 chr9:85677996-85677997(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RASEF	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-3p
Interactor2: RASEF

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg