Basic Information:

  VIRBase ID:  

VHID00349481

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6061

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:  MIMAT0003424          DCAF10:  NM_024345     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-3p	DCAF10
miRBase Accession/Entrez ID	MIMAT0003424	79269
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	WDR32

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DCAF10	chr9:37846571(+) A-I      intronic chr9:37828010(+) A-I      intronic chr9:37826952(+) A-I      intronic chr9:37827929(+) A-I      intronic chr9:37826962(+) A-I      intronic chr9:37827066(+) A-I      intronic chr9:37827057(+) A-I      intronic chr9:37838767(+) A-I      intronic chr9:37832960(+) A-I      intronic chr9:37833014(+) A-I      intronic chr9:37833992(+) A-I      intronic chr9:37834016(+) A-I      intronic chr9:37834037(+) A-I      intronic chr9:37834109(+) A-I      intronic chr9:37846634(+) A-I      intronic chr9:37846637(+) A-I      intronic chr9:37846643(+) A-I      intronic chr9:37846651(+) A-I      intronic chr9:37846663(+) A-I      intronic chr9:37847004(+) A-I      intronic chr9:37847012(+) A-I      intronic chr9:37847017(+) A-I      intronic chr9:37847103(+) A-I      intronic chr9:37847130(+) A-I      intronic chr9:37847139(+) A-I      intronic chr9:37847175(+) A-I      intronic chr9:37847185(+) A-I      intronic chr9:37849618(+) A-I      intronic chr9:37849625(+) A-I      intronic chr9:37849746(+) A-I      intronic chr9:37849756(+) A-I      intronic chr9:37838741(+) A-I      intronic chr9:37854367(+) A-I      intronic chr9:37854365(+) A-I      intronic chr9:37854344(+) A-I      intronic chr9:37854343(+) A-I      intronic chr9:37854340(+) A-I      intronic chr9:37854333(+) A-I      intronic chr9:37852424(+) A-I      intronic chr9:37852413(+) A-I      intronic chr9:37852409(+) A-I      intronic chr9:37852394(+) A-I      intronic chr9:37852384(+) A-I      intronic chr9:37838702(+) A-I      intronic chr9:37838679(+) A-I      intronic chr9:37827923(+) A-I      intronic chr9:37837928(+) A-I      intronic chr9:37837898(+) A-I      intronic chr9:37837474(+) A-I      intronic chr9:37826903(+) A-I      intronic chr9:37826900(+) A-I      intronic chr9:37826879(+) A-I      intronic chr9:37825973(+) A-I      intronic chr9:37825957(+) A-I      intronic chr9:37818265(+) A-I      intronic chr9:37818256(+) A-I      intronic chr9:37818129(+) A-I      intronic chr9:37818119(+) A-I      intronic chr9:37818115(+) A-I      intronic chr9:37818048(+) A-I      intronic chr9:37815980(+) A-I      intronic chr9:37815963(+) A-I      intronic chr9:37815858(+) A-I      intronic chr9:37814419(+) A-I      intronic chr9:37814407(+) A-I      intronic chr9:37814328(+) A-I      intronic chr9:37814205(+) A-I      intronic chr9:37813282(+) A-I      intronic chr9:37813115(+) A-I      intronic chr9:37812731(+) A-I      intronic chr9:37812730(+) A-I      intronic chr9:37812650(+) A-I      intronic chr9:37809795(+) A-I      intronic chr9:37809719(+) A-I      intronic chr9:37808356(+) A-I      intronic chr9:37837401(+) A-I      intronic chr9:37809567(+) A-I      intronic chr9:37809683(+) A-I      intronic chr9:37809707(+) A-I      intronic chr9:37835456(+) A-I      intronic chr9:37835455(+) A-I      intronic chr9:37828022(+) A-I      intronic chr9:37828020(+) A-I      intronic chr9:37835429(+) A-I      intronic chr9:37835411(+) A-I      intronic chr9:37847146(+) A-I      intronic chr9:37851698(+) A-I      intronic chr9:37851536(+) A-I      intronic chr9:37849857(+) A-I      intronic chr9:37849770(+) A-I      intronic chr9:37849766(+) A-I      intronic chr9:37835320(+) A-I      intronic chr9:37835057(+) A-I      intronic chr9:37834992(+) A-I      intronic chr9:37835691(+) A-I      intronic chr9:37837196(+) A-I      intronic chr9:37837377(+) A-I      intronic chr9:37838761(+) A-I      intronic chr9:37838754(+) A-I      intronic chr9:37837400(+) A-I      intronic chr9:37835656(+) A-I      intronic chr9:37835469(+) A-I      intronic chr9:37834890(+) A-I      intronic chr9:37849624(+) A-I      intronic chr9:37808169(+) A-I      intronic chr9:37826923(+) A-I      intronic chr9:37826916(+) A-I      intronic chr9:37844359(+) A-I      intronic chr9:37844353(+) A-I      intronic chr9:37844336(+) A-I      intronic chr9:37844335(+) A-I      intronic chr9:37844326(+) A-I      intronic chr9:37843275(+) A-I      intronic chr9:37843249(+) A-I      intronic chr9:37835246(+) A-I      intronic chr9:37835231(+) A-I      intronic chr9:37835212(+) A-I      intronic chr9:37835209(+) A-I      intronic chr9:37835207(+) A-I      intronic chr9:37835177(+) A-I      intronic chr9:37835176(+) A-I      intronic chr9:37825872(+) A-I      intronic chr9:37825871(+) A-I      intronic chr9:37825868(+) A-I      intronic chr9:37825867(+) A-I      intronic chr9:37825866(+) A-I      intronic chr9:37825863(+) A-I      intronic chr9:37825860(+) A-I      intronic chr9:37838614(+) A-I      intronic chr9:37825855(+) A-I      intronic chr9:37825854(+) A-I      intronic chr9:37825839(+) A-I      intronic chr9:37825834(+) A-I      intronic chr9:37825832(+) A-I      intronic chr9:37825830(+) A-I      intronic chr9:37825820(+) A-I      intronic chr9:37815974(+) A-I      intronic chr9:37815940(+) A-I      intronic chr9:37808298(+) A-I      intronic chr9:37808294(+) A-I      intronic chr9:37808282(+) A-I      intronic chr9:37832268(+) A-I      intronic chr9:37829352(+) A-I      intronic chr9:37829251(+) A-I      intronic chr9:37829250(+) A-I      intronic chr9:37828363(+) A-I      intronic chr9:37828357(+) A-I      intronic chr9:37807763(+) A-I      intronic chr9:37807760(+) A-I      intronic chr9:37807759(+) A-I      intronic chr9:37807753(+) A-I      intronic chr9:37828068(+) A-I      intronic chr9:37807746(+) A-I      intronic chr9:37807734(+) A-I      intronic chr9:37832920(+) A-I      intronic chr9:37832335(+) A-I      intronic chr9:37832272(+) A-I      intronic chr9:37839208(+) A-I      intronic chr9:37839126(+) A-I      intronic chr9:37834157(+) A-I      intronic chr9:37839079(+) A-I      intronic chr9:37839217(+) A-I      intronic chr9:37834066(+) A-I      intronic chr9:37839221(+) A-I      intronic chr9:37838768(+) A-I      intronic chr9:37837900(+) A-I      intronic chr9:37808284(+) A-I      intronic chr9:37839222(+) A-I      intronic chr9:37839309(+) A-I      intronic chr9:37843065(+) A-I      intronic chr9:37843076(+) A-I      intronic chr9:37843078(+) A-I      intronic chr9:37843108(+) A-I      intronic chr9:37843176(+) A-I      intronic chr9:37843180(+) A-I      intronic chr9:37843274(+) A-I      intronic chr9:37844365(+) A-I      intronic chr9:37844386(+) A-I      intronic chr9:37844573(+) A-I      intronic chr9:37864203(+) A-I      3'UTR chr9:37831059(+) A-I      intronic chr9:37846547(+) A-I      intronic chr9:37838659(+) A-I      intronic chr9:37815868(+) A-I      intronic chr9:37808181(+) A-I      intronic chr9:37814236(+) A-I      intronic chr9:37829175(+) A-I      intronic chr9:37846583(+) A-I      intronic chr9:37834132(+) A-I      intronic chr9:37835392(+) A-I      intronic chr9:37843223(+) A-I      intronic chr9:37846579(+) A-I      intronic chr9:37849563(+) A-I      intronic chr9:37815948(+) A-I      intronic chr9:37863173(+) A-I      3'UTR chr9:37863167(+) A-I      3'UTR chr9:37863298(+) A-I      3'UTR chr9:37863208(+) A-I      3'UTR chr9:37863161(+) A-I      3'UTR chr9:37863136(+) A-I      3'UTR chr9:37863202(+) A-I      3'UTR chr9:37863165(+) A-I      3'UTR chr9:37863244(+) A-I      3'UTR chr9:37863238(+) A-I      3'UTR chr9:37863232(+) A-I      3'UTR chr9:37863105(+) A-I      3'UTR chr9:37863267(+) A-I      3'UTR chr9:37863273(+) A-I      3'UTR chr9:37863268(+) A-I      3'UTR chr9:37863158(+) A-I      3'UTR chr9:37863307(+) A-I      3'UTR chr9:37863137(+) A-I      3'UTR chr9:37863122(+) A-I      3'UTR chr9:37863070(+) A-I      3'UTR chr9:37863203(+) A-I      3'UTR chr9:37863075(+) A-I      3'UTR chr9:37863069(+) A-I      3'UTR chr9:37863152(+) A-I      3'UTR chr9:37863108(+) A-I      3'UTR chr9:37863212(+) A-I      3'UTR chr9:37863147(+) A-I      3'UTR chr9:37863139(+) A-I      3'UTR chr9:37863162(+) A-I      3'UTR chr9:37863216(+) A-I      3'UTR chr9:37863243(+) A-I      3'UTR chr9:37863235(+) A-I      3'UTR chr9:37863113(+) A-I      3'UTR chr9:37863255(+) A-I      3'UTR chr9:37863230(+) A-I      3'UTR chr9:37863283(+) A-I      3'UTR chr9:37863176(+) A-I      3'UTR chr9:37863251(+) A-I      3'UTR chr9:37834117(+) A-I      intronic chr9:37831826(+) A-I      intronic chr9:37851120(+) A-I      intronic chr9:37833063(+) A-I      intronic chr9:37846715(+) A-I      intronic chr9:37843276(+) A-I      intronic chr9:37828074(+) A-I      intronic chr9:37815877(+) A-I      intronic chr9:37815981(+) A-I      intronic chr9:37843084(+) A-I      intronic chr9:37829749(+) A-I      intronic chr9:37851085(+) A-I      intronic chr9:37832966(+) A-I      intronic chr9:37835200(+) A-I      intronic chr9:37817355(+) A-I      intronic chr9:37846593(+) A-I      intronic chr9:37814344(+) A-I      intronic chr9:37828070(+) A-I      intronic chr9:37835391(+) A-I      intronic chr9:37835321(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DCAF10	chr9:37835932(+) A-I intron -    22327324 chr9:37836083(+) A-I intron -    22327324 chr9:37836117(+) A-I intron -    22327324 chr9:37836171(+) A-I intron -    22327324 chr9:37836181(+) A-I intron -    22327324 chr9:37836289(+) A-I intron -    22327324 chr9:37863069(+) A-I intron -    22028664 chr9:37863070(+) A-I intron -    22028664 chr9:37863075(+) A-I intron -    22028664 chr9:37863105(+) A-I intron -    22028664 chr9:37863108(+) A-I intron -    22028664 chr9:37863113(+) A-I intron -    22028664 chr9:37863122(+) A-I intron -    22028664 chr9:37863136(+) A-I intron -    22028664 chr9:37863137(+) A-I intron -    22028664 chr9:37863139(+) A-I intron -    22028664 chr9:37863147(+) A-I intron -    22028664 chr9:37863152(+) A-I intron -    22028664 chr9:37863158(+) A-I intron -    22028664 chr9:37863161(+) A-I intron -    22028664 chr9:37863162(+) A-I intron -    22028664 chr9:37863165(+) A-I intron -    22028664 chr9:37863167(+) A-I intron -    22028664 chr9:37863173(+) A-I intron -    22028664 chr9:37863176(+) A-I intron -    22028664 chr9:37863196(+) A-I intron -    22028664 chr9:37863202(+) A-I intron -    22028664 chr9:37863203(+) A-I intron -    22028664 chr9:37863208(+) A-I intron -    22028664 chr9:37863212(+) A-I intron -    22028664 chr9:37863216(+) A-I intron -    22028664 chr9:37863230(+) A-I intron -    22028664 chr9:37863232(+) A-I intron -    22028664 chr9:37863235(+) A-I intron -    22028664 chr9:37863238(+) A-I intron -    22028664 chr9:37863243(+) A-I intron -    22028664 chr9:37863244(+) A-I intron -    22028664 chr9:37863251(+) A-I intron -    22028664 chr9:37863255(+) A-I intron -    22028664 chr9:37863267(+) A-I intron -    22028664 chr9:37863268(+) A-I intron -    22028664 chr9:37863273(+) A-I intron -    22028664 chr9:37863283(+) A-I intron -    22028664 chr9:37863298(+) A-I intron -    22028664 chr9:37863307(+) A-I intron -    22028664 chr9:37863062(+) T-C intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DCAF10	chr9:37800799-37800800(+) m6A 5'UTR//intron       24981863 chr9:37801164-37801165(+) m6A CDS//intron       - chr9:37801278-37801279(+) m6A CDS//intron       24209618//25456834//22608085 chr9:37801290-37801291(+) m6A CDS//intron       24209618//25456834//22608085 chr9:37801338-37801339(+) m6A CDS//intron       24209618//25456834 chr9:37860110-37860111(+) m6A CDS//exon       24284625//24209618//22608085 chr9:37860230-37860231(+) m6A exon//intron       24284625//24209618//25456834//27773535//22608085 chr9:37860376-37860377(+) m6A exon//intron       24284625//24981863//27773535//22608085 chr9:37861255-37861256(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:37861330-37861331(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:37861342-37861343(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:37861528-37861529(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr9:37861635-37861636(+) m6A 3'UTR//exon       24284625 chr9:37861693-37861694(+) m6A 3'UTR//exon       24284625 chr9:37861752-37861753(+) m6A 3'UTR//exon       24284625 chr9:37863757-37863758(+) m6A 3'UTR       27773535 chr9:37863799-37863800(+) m6A 3'UTR       27773535 chr9:37865162-37865163(+) m6A 3'UTR       24981863 chr9:37865199-37865200(+) m6A 3'UTR       24981863 chr9:37865268-37865269(+) m6A 3'UTR       24981863//27773535 chr9:37865310-37865311(+) m6A 3'UTR       24981863 chr9:37865320-37865321(+) m6A 3'UTR       24981863 chr9:37866804-37866805(+) m6A 3'UTR       24981863 chr9:37866913-37866914(+) m6A 3'UTR       24981863 chr9:37867155-37867156(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DCAF10	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-3p
Interactor2: DCAF10

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//Rep//Targetscan
Support Database	RepTar//ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.