Detail Information

Basic Information:


  VIRBase ID:  

VHID00349263

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6061

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:           ZNFX1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-3p ZNFX1
miRBase
Accession/Entrez ID		 MIMAT0003424 57169
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNFX1
chr20:47828675(-) A-I      intronic
chr20:47884607(-) A-I      intronic
chr20:47828687(-) A-I      intronic
chr20:47878450(-) A-I      intronic
chr20:47878447(-) A-I      intronic
chr20:47828699(-) A-I      intronic
chr20:47884593(-) A-I      intronic
chr20:47828665(-) A-I      intronic
chr20:47828640(-) A-I      intronic
chr20:47828637(-) A-I      intronic
chr20:47877455(-) A-I      intronic
chr20:47877509(-) A-I      intronic
chr20:47877688(-) A-I      intronic
chr20:47877714(-) A-I      intronic
chr20:47878259(-) A-I      intronic
chr20:47878268(-) A-I      intronic
chr20:47878288(-) A-I      intronic
chr20:47878294(-) A-I      intronic
chr20:47878311(-) A-I      intronic
chr20:47878315(-) A-I      intronic
chr20:47878429(-) A-I      intronic
chr20:47878722(-) A-I      intronic
chr20:47878760(-) A-I      intronic
chr20:47878815(-) A-I      intronic
chr20:47878848(-) A-I      intronic
chr20:47878930(-) A-I      intronic
chr20:47883530(-) A-I      intronic
chr20:47883531(-) A-I      intronic
chr20:47883536(-) A-I      intronic
chr20:47883607(-) A-I      intronic
chr20:47883660(-) A-I      intronic
chr20:47884633(-) A-I      intronic
chr20:47886031(-) A-I      intronic
chr20:47886039(-) A-I      intronic
chr20:47886056(-) A-I      intronic
chr20:47886106(-) A-I      intronic
chr20:47886110(-) A-I      intronic
chr20:47886118(-) A-I      intronic
chr20:47886136(-) A-I      intronic
chr20:47889746(-) A-I      intronic
chr20:47889865(-) A-I      intronic
chr20:47890255(-) A-I      intronic
chr20:47890359(-) A-I      intronic
chr20:47890367(-) A-I      intronic
chr20:47890372(-) A-I      intronic
chr20:47890384(-) A-I      intronic
chr20:47891065(-) A-I      intronic
chr20:47891124(-) A-I      intronic
chr20:47891152(-) A-I      intronic
chr20:47891188(-) A-I      intronic
chr20:47891220(-) A-I      intronic
chr20:47892169(-) A-I      intronic
chr20:47878819(-) A-I      intronic
chr20:47844502(-) A-I      intronic
chr20:47866533(-) A-I      intronic
chr20:47866566(-) A-I      intronic
chr20:47866575(-) A-I      intronic
chr20:47866589(-) A-I      intronic
chr20:47866635(-) A-I      intronic
chr20:47866644(-) A-I      intronic
chr20:47866660(-) A-I      intronic
chr20:47867199(-) A-I      intronic
chr20:47867253(-) A-I      intronic
chr20:47868515(-) A-I      intronic
chr20:47874277(-) A-I      intronic
chr20:47874324(-) A-I      intronic
chr20:47874331(-) A-I      intronic
chr20:47874341(-) A-I      intronic
chr20:47874363(-) A-I      intronic
chr20:47874444(-) A-I      intronic
chr20:47874445(-) A-I      intronic
chr20:47874761(-) A-I      intronic
chr20:47874809(-) A-I      intronic
chr20:47874825(-) A-I      intronic
chr20:47875231(-) A-I      intronic
chr20:47875286(-) A-I      intronic
chr20:47875317(-) A-I      intronic
chr20:47875378(-) A-I      intronic
chr20:47875382(-) A-I      intronic
chr20:47875515(-) A-I      intronic
chr20:47875530(-) A-I      intronic
chr20:47875539(-) A-I      intronic
chr20:47875563(-) A-I      intronic
chr20:47876743(-) A-I      intronic
chr20:47876769(-) A-I      intronic
chr20:47877451(-) A-I      intronic
chr20:47854782(-) A-I      3'UTR
chr20:47876097(-) A-I      intronic
chr20:47876257(-) A-I      intronic
chr20:47889941(-) A-I      intronic
chr20:47878827(-) A-I      intronic
chr20:47875227(-) A-I      intronic
chr20:47874797(-) A-I      intronic
chr20:47890410(-) A-I      intronic
chr20:47877572(-) A-I      intronic
chr20:47875449(-) A-I      intronic
chr20:47884478(-) A-I      intronic
chr20:47883653(-) A-I      intronic
chr20:47868278(-) A-I      intronic
chr20:47875474(-) A-I      intronic
chr20:47830565(-) A-I      intronic
chr20:47890405(-) A-I      intronic
chr20:47867474(-) A-I      intronic
chr20:47830995(-) A-I      intronic
chr20:47866794(-) A-I      intronic
chr20:47876697(-) A-I      intronic
chr20:47883911(-) A-I      intronic
chr20:47891975(-) A-I      intronic
chr20:47892121(-) A-I      intronic
chr20:47885975(-) A-I      intronic
chr20:47891069(-) A-I      intronic
chr20:47875081(-) A-I      intronic
chr20:47831041(-) A-I      intronic
chr20:47876027(-) A-I      intronic
chr20:47877689(-) A-I      intronic
chr20:47829614(-) A-I      intronic
chr20:47876709(-) A-I      intronic
chr20:47875261(-) A-I      intronic
chr20:47889814(-) A-I      intronic
chr20:47886212(-) A-I      intronic
chr20:47891998(-) A-I      intronic
chr20:47876143(-) A-I      intronic
chr20:47867887(-) A-I      intronic
chr20:47891130(-) A-I      intronic
chr20:47876750(-) A-I      intronic
chr20:47877294(-) A-I      intronic
chr20:47866708(-) A-I      intronic
chr20:47876216(-) A-I      intronic
chr20:47890461(-) A-I      intronic
chr20:47878455(-) A-I      intronic
chr20:47878904(-) A-I      intronic
chr20:47867138(-) A-I      intronic
chr20:47868816(-) A-I      intronic
chr20:47886132(-) A-I      intronic
chr20:47878831(-) A-I      intronic
chr20:47878689(-) A-I      intronic
chr20:47883705(-) A-I      intronic
chr20:47892161(-) A-I      intronic
chr20:47880504(-) A-I      intronic
chr20:47866588(-) A-I      intronic
chr20:47866705(-) A-I      intronic
chr20:47878321(-) A-I      intronic
chr20:47866629(-) A-I      intronic
chr20:47878347(-) A-I      intronic
chr20:47886131(-) A-I      intronic
chr20:47867177(-) A-I      intronic
chr20:47866710(-) A-I      intronic
chr20:47834619(-) A-I      intronic
chr20:47868330(-) A-I      intronic
chr20:47875531(-) A-I      intronic
chr20:47867855(-) A-I      intronic
chr20:47875108(-) A-I      intronic
chr20:47891980(-) A-I      intronic
chr20:47876193(-) A-I      intronic
chr20:47875500(-) A-I      intronic
chr20:47867858(-) A-I      intronic
chr20:47832875(-) A-I      intronic
chr20:47875527(-) A-I      intronic
chr20:47867518(-) A-I      intronic
chr20:47878883(-) A-I      intronic
chr20:47875171(-) A-I      intronic
chr20:47878821(-) A-I      intronic
chr20:47830625(-) A-I      intronic
chr20:47892167(-) A-I      intronic
chr20:47874805(-) A-I      intronic
chr20:47867920(-) A-I      intronic
chr20:47891044(-) A-I      intronic
chr20:47876692(-) A-I      intronic
chr20:47866670(-) A-I      intronic
chr20:47875553(-) A-I      intronic
chr20:47868637(-) A-I      intronic
chr20:47878708(-) A-I      intronic
chr20:47884641(-) A-I      intronic
chr20:47875475(-) A-I      intronic
chr20:47875329(-) A-I      intronic
chr20:47889794(-) A-I      intronic
chr20:47832812(-) A-I      intronic
chr20:47874904(-) A-I      intronic
chr20:47891084(-) A-I      intronic
chr20:47868507(-) A-I      intronic
chr20:47876255(-) A-I      intronic
chr20:47875478(-) A-I      intronic
chr20:47876712(-) A-I      intronic
chr20:47867480(-) A-I      intronic
chr20:47867185(-) A-I      intronic
chr20:47867364(-) A-I      intronic
chr20:47866547(-) A-I      intronic
chr20:47867776(-) A-I      intronic
chr20:47892057(-) A-I      intronic
chr20:47884630(-) A-I      intronic
chr20:47891213(-) A-I      intronic
chr20:47886036(-) A-I      intronic
chr20:47868318(-) A-I      intronic
chr20:47874802(-) A-I      intronic
chr20:47866680(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNFX1
chr20:47874904(-) A-I intron -    22327324
chr20:47876051(-) A-I intron -    22327324
chr20:47876193(-) A-I intron -    21960545
chr20:47866680(-) A-G intron -    22484847
chr20:47866708(-) A-G intron -    22484847
chr20:47866709(-) A-G intron -    22484847
chr20:47867933(-) A-G intron -    22484847
chr20:47874904(-) A-G intron -    22484847
chr20:47876051(-) A-G intron -    22484847
chr20:47876056(-) A-G intron -    22484847
chr20:47876083(-) A-G intron -    22484847
chr20:47876216(-) A-G intron -    22484847
chr20:47876255(-) A-G intron -    22484847
chr20:47876750(-) A-G intron -    22484847
chr20:47878455(-) A-G intron -    22484847
chr20:47892057(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNFX1
chr20:47855542-47855543(-) m6A CDS//exon       24284625//24209618//24981863//27773535
chr20:47855616-47855617(-) m6A CDS//exon       24284625//24209618//24981863//27773535
chr20:47855677-47855678(-) m6A CDS//exon       24284625//24209618//24981863//27773535
chr20:47855738-47855739(-) m6A CDS//exon       24209618//24981863
chr20:47855818-47855819(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22575960
chr20:47861225-47861226(-) m6A exon//intron       27773535
chr20:47861232-47861233(-) m6A exon//intron       27773535
chr20:47862451-47862452(-) m6A 3'UTR//intron       27773535
chr20:47862556-47862557(-) m6A 3'UTR//intron       24284625//27773535
chr20:47862607-47862608(-) m6A 3'UTR//intron       24284625
chr20:47862625-47862626(-) m6A 3'UTR//intron       24284625
chr20:47862904-47862905(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47862960-47862961(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:47862967-47862968(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:47863024-47863025(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:47863052-47863053(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535
chr20:47863076-47863077(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535
chr20:47863093-47863094(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535
chr20:47863125-47863126(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535
chr20:47863150-47863151(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535
chr20:47863238-47863239(-) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085
chr20:47863252-47863253(-) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085
chr20:47863303-47863304(-) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085
chr20:47863431-47863432(-) m6A 3'UTR//intron       24284625//27773535
chr20:47863598-47863599(-) m6A 3'UTR//intron       24981863
chr20:47863621-47863622(-) m6A 3'UTR//intron       24209618//24981863
chr20:47863735-47863736(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr20:47863831-47863832(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47864142-47864143(-) m6A CDS//intron       24284625//27773535
chr20:47864168-47864169(-) m6A CDS//intron       24284625//24981863//26404942//27773535
chr20:47864257-47864258(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22608085
chr20:47864304-47864305(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47864355-47864356(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47864366-47864367(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47864467-47864468(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr20:47864518-47864519(-) m6A CDS//intron       24284625//26404942//27773535//27371828//22608085
chr20:47864649-47864650(-) m6A CDS//intron       24284625//26404942//27773535//27371828
chr20:47864660-47864661(-) m6A CDS//intron       24284625//26404942//27371828//22608085
chr20:47864674-47864675(-) m6A CDS//intron       24284625//26404942//27371828//22608085
chr20:47864742-47864743(-) m6A CDS//intron       24284625//26404942//27773535
chr20:47864758-47864759(-) m6A CDS//intron       24284625//27773535
chr20:47864791-47864792(-) m6A CDS//intron       24284625//27773535
chr20:47864985-47864986(-) m6A CDS//intron       24284625//24209618//27773535
chr20:47865024-47865025(-) m6A CDS//intron       24284625//27773535
chr20:47865085-47865086(-) m6A CDS//intron       24284625//27773535//22575960
chr20:47865095-47865096(-) m6A CDS//intron       24284625//27773535//22575960
chr20:47865129-47865130(-) m6A CDS//intron       24284625//27773535//22575960
chr20:47865241-47865242(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960
chr20:47865345-47865346(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47865382-47865383(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47865486-47865487(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr20:47865509-47865510(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:47865752-47865753(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr20:47865763-47865764(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr20:47865802-47865803(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr20:47865862-47865863(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr20:47866006-47866007(-) m6A CDS//intron       24284625//24981863//27773535
chr20:47866037-47866038(-) m6A CDS//intron       24284625//24981863
chr20:47866053-47866054(-) m6A CDS//intron       24284625//24981863
chr20:47869284-47869285(-) m6A CDS       27773535
chr20:47869329-47869330(-) m6A CDS       27773535
chr20:47870212-47870213(-) m6A CDS       -
chr20:47872371-47872372(-) m6A CDS       24981863//27371828
chr20:47872422-47872423(-) m6A CDS       24209618//24981863//27773535//27371828
chr20:47872427-47872428(-) m6A CDS       24209618//24981863//27773535//27371828
chr20:47872483-47872484(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828
chr20:47873980-47873981(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828
chr20:47873991-47873992(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960
chr20:47874008-47874009(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960
chr20:47874047-47874048(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr20:47874066-47874067(-) m1A CDS       26863196
chr20:47874113-47874114(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr20:47874173-47874174(-) m1A CDS       26863196
chr20:47877012-47877013(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:47879879-47879880(-) m6A CDS       24284625
chr20:47881307-47881308(-) m6A CDS       24284625
chr20:47881380-47881381(-) m6A CDS       24284625
chr20:47882685-47882686(-) m6A CDS       24284625
chr20:47882797-47882798(-) m6A CDS       24284625
chr20:47886481-47886482(-) m6A CDS       24284625
chr20:47886491-47886492(-) m6A CDS       24284625
chr20:47886509-47886510(-) m6A CDS       24284625
chr20:47886614-47886615(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47886785-47886786(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:47886826-47886827(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:47886961-47886962(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47886972-47886973(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47887043-47887044(-) m6A CDS       24284625//24981863//22608085
chr20:47887158-47887159(-) m6A CDS       24284625
chr20:47887178-47887179(-) m6A CDS       24284625
chr20:47887202-47887203(-) m6A CDS       24284625//27773535
chr20:47887345-47887346(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr20:47887365-47887366(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr20:47887439-47887440(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:47887450-47887451(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:47887467-47887468(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:47887552-47887553(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:47887590-47887591(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:47887635-47887636(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:47887655-47887656(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr20:47887710-47887711(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr20:47887881-47887882(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47887919-47887920(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr20:47887940-47887941(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47887963-47887964(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888000-47888001(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888007-47888008(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888016-47888017(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888060-47888061(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888067-47888068(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888100-47888101(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47888121-47888122(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:47892361-47892362(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr20:47892377-47892378(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828
chr20:47894503-47894504(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828
chr20:47894930-47894931(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNFX1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-3p
Interactor2: ZNFX1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence cRep//miRanda//PARalyzer//PITA//RNAHybrid//Targetscan
Support Database RepTar//ViRBase//VIRmiRNA//VmiReg

References:


PMID 22100165 Target region 3'UTR
Source RepTar//ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells Interactor2 expression Downregulation
Description Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

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