Basic Information:

  VIRBase ID:  

VHID00349212

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:  MIMAT0003424          RNF20:  NM_019592     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-3p	RNF20
miRBase Accession/Entrez ID	MIMAT0003424	56254
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BRE1//BRE1A//hBRE1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RNF20	chr9:104303422(+) A-I      intronic chr9:104307255(+) A-I      intronic chr9:104307260(+) A-I      intronic chr9:104307269(+) A-I      intronic chr9:104307291(+) A-I      intronic chr9:104307296(+) A-I      intronic chr9:104303485(+) A-I      intronic chr9:104306643(+) A-I      intronic chr9:104306868(+) A-I      intronic chr9:104306610(+) A-I      intronic chr9:104306867(+) A-I      intronic chr9:104303586(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RNF20	chr9:104297740-104297741(+) m6A CDS//exon       - chr9:104297792-104297793(+) m6A CDS//exon       - chr9:104297804-104297805(+) m6A CDS//exon       - chr9:104309208-104309209(+) m6A CDS       24981863 chr9:104309711-104309712(+) m6A CDS       24981863 chr9:104309729-104309730(+) m6A CDS       24981863 chr9:104309751-104309752(+) m6A CDS       24981863 chr9:104314716-104314717(+) m6A CDS       24981863//27773535 chr9:104314744-104314745(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr9:104314758-104314759(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr9:104314833-104314834(+) m1A CDS       26863196 chr9:104314975-104314976(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr9:104315014-104315015(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:104315029-104315030(+) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr9:104316299-104316300(+) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr9:104316335-104316336(+) m6A CDS       24209618//24981863//27773535//22608085 chr9:104316343-104316344(+) m6A CDS       24209618//24981863//27773535//22608085 chr9:104316372-104316373(+) m1A CDS       26863196 chr9:104316995-104316996(+) m6A CDS       24209618//24981863//27773535//22608085 chr9:104317030-104317031(+) m6A CDS       24209618//24981863//27773535//22608085 chr9:104319717-104319718(+) m6A CDS       24981863 chr9:104319852-104319853(+) m6A CDS       24981863 chr9:104319872-104319873(+) m6A CDS       24981863 chr9:104323111-104323112(+) m6A CDS//exon       24981863 chr9:104323178-104323179(+) m6A CDS//exon       24981863 chr9:104323465-104323466(+) m6A CDS//exon       24981863 chr9:104323486-104323487(+) m6A CDS//exon       24981863 chr9:104324617-104324618(+) m6A CDS       24284625 chr9:104324742-104324743(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr9:104324762-104324763(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:104324799-104324800(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:104324830-104324831(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:104324882-104324883(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:104324922-104324923(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:104324975-104324976(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr9:104325012-104325013(+) m6A 3'UTR       24284625//24209618//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RNF20	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-3p
Interactor2: RNF20

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA
Support Database	RepTar//VmiReg