Detail Information

Basic Information:


  VIRBase ID:  

VHID00348414

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:           EHD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-3p EHD1
miRBase
Accession/Entrez ID		 MIMAT0003424 10938
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - H-PAST//HPAST1//PAST//PAST1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EHD1
chr11:64625714(-) A-I      intronic
chr11:64625750(-) A-I      intronic
chr11:64624870(-) A-I      intronic
chr11:64629604(-) A-I      intronic
chr11:64625917(-) A-I      intronic
chr11:64625951(-) A-I      intronic
chr11:64626789(-) A-I      intronic
chr11:64625818(-) A-I      intronic
chr11:64626757(-) A-I      intronic
chr11:64626929(-) A-I      intronic
chr11:64626933(-) A-I      intronic
chr11:64641724(-) A-I      intronic
chr11:64624731(-) A-I      intronic
chr11:64641676(-) A-I      intronic
chr11:64641593(-) A-I      intronic
chr11:64641591(-) A-I      intronic
chr11:64625870(-) A-I      intronic
chr11:64641559(-) A-I      intronic
chr11:64641533(-) A-I      intronic
chr11:64641225(-) A-I      intronic
chr11:64641428(-) A-I      intronic
chr11:64625791(-) A-I      intronic
chr11:64630234(-) A-I      intronic
chr11:64626916(-) A-I      intronic
chr11:64629592(-) A-I      intronic
chr11:64626910(-) A-I      intronic
chr11:64625792(-) A-I      intronic
chr11:64641627(-) A-I      intronic
chr11:64625721(-) A-I      intronic
chr11:64628160(-) A-I      intronic
chr11:64625782(-) A-I      intronic
chr11:64625775(-) A-I      intronic
chr11:64625955(-) A-I      intronic
chr11:64625853(-) A-I      intronic
chr11:64625751(-) A-I      intronic
chr11:64625746(-) A-I      intronic
chr11:64625861(-) A-I      intronic
chr11:64624640(-) A-I      intronic
chr11:64626788(-) A-I      intronic
chr11:64624858(-) A-I      intronic
chr11:64626908(-) A-I      intronic
chr11:64625822(-) A-I      intronic
chr11:64626954(-) A-I      intronic
chr11:64641333(-) A-I      intronic
chr11:64625767(-) A-I      intronic
chr11:64625739(-) A-I      intronic
chr11:64626820(-) A-I      intronic
chr11:64625545(-) A-I      intronic
chr11:64626870(-) A-I      intronic
chr11:64626989(-) A-I      intronic
chr11:64625860(-) A-I      intronic
chr11:64641628(-) A-I      intronic
chr11:64625894(-) A-I      intronic
chr11:64625934(-) A-I      intronic
chr11:64629541(-) A-I      intronic
chr11:64630246(-) A-I      intronic
chr11:64626864(-) A-I      intronic
chr11:64641325(-) A-I      intronic
chr11:64641323(-) A-I      intronic
chr11:64629556(-) A-I      intronic
chr11:64641754(-) A-I      intronic
chr11:64641327(-) A-I      intronic
chr11:64629496(-) A-I      intronic
chr11:64624651(-) A-I      intronic
chr11:64630237(-) A-I      intronic
chr11:64628108(-) A-I      intronic
chr11:64629519(-) A-I      intronic
chr11:64626909(-) A-I      intronic
chr11:64630203(-) A-I      intronic
chr11:64625875(-) A-I      intronic
chr11:64625889(-) A-I      intronic
chr11:64639838(-) A-I      intronic
chr11:64625873(-) A-I      intronic
chr11:64624734(-) A-I      intronic
chr11:64641654(-) A-I      intronic
chr11:64625912(-) A-I      intronic
chr11:64624652(-) A-I      intronic
chr11:64625824(-) A-I      intronic
chr11:64630238(-) A-I      intronic
chr11:64626880(-) A-I      intronic
chr11:64624849(-) A-I      intronic
chr11:64629505(-) A-I      intronic
chr11:64624756(-) A-I      intronic
chr11:64626812(-) A-I      intronic
chr11:64626868(-) A-I      intronic
chr11:64625933(-) A-I      intronic
chr11:64629594(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED EHD1
chr11:64625955(-) A-I intron -    22327324
chr11:64625934(-) A-I intron -    21960545
chr11:64625860(-) A-G intron -    22484847
chr11:64625955(-) A-G intron -    22484847
chr11:64626864(-) A-G intron -    22484847
chr11:64626880(-) A-G intron -    22484847
chr11:64629496(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EHD1
chr11:64619747-64619748(-) m6A 3'UTR       -
chr11:64619805-64619806(-) m6A 3'UTR       -
chr11:64620370-64620371(-) m6A 3'UTR//exon       24284625
chr11:64620942-64620943(-) m6A 3'UTR//exon       24284625//27773535
chr11:64621354-64621355(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621401-64621402(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621407-64621408(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621478-64621479(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621595-64621596(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621674-64621675(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621710-64621711(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:64621813-64621814(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr11:64621937-64621938(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr11:64622078-64622079(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:64622270-64622271(-) m6A CDS//exon       24284625//24209618//27371828//27773536
chr11:64622309-64622310(-) m6A CDS//exon       24284625//27371828//27773536
chr11:64622316-64622317(-) m6A CDS//exon       24284625//27371828//27773536
chr11:64622326-64622327(-) m6A CDS//exon       24284625//27371828//27773536
chr11:64622818-64622819(-) m6A CDS//exon       24284625//27773535
chr11:64622875-64622876(-) m6A CDS//exon       24284625//27773535
chr11:64623121-64623122(-) m6A exon//intron       -
chr11:64623159-64623160(-) m6A exon//intron       -
chr11:64624028-64624029(-) m6A exon//intron       -
chr11:64627249-64627250(-) m6A exon//intron       27371828
chr11:64627279-64627280(-) m6A exon//intron       27371828
chr11:64627306-64627307(-) m6A exon//intron       27371828
chr11:64627337-64627338(-) m6A exon//intron       25456834//27371828//22575960
chr11:64627390-64627391(-) m6A exon//intron       24284625//25456834//24981863//26404942//27371828//22575960
chr11:64627468-64627469(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//27773536//22575960
chr11:64627480-64627481(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//27773536//22575960
chr11:64627643-64627644(-) Cm CDS//exon       -
chr11:64627645-64627646(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr11:64627654-64627655(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr11:64627675-64627676(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr11:64627684-64627685(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr11:64627726-64627727(-) m6A CDS//exon       24284625//27371828//27773536
chr11:64627762-64627763(-) m6A CDS//exon       24284625//27773536
chr11:64641954-64641955(-) m6A CDS//exon       27773536
chr11:64645586-64645587(-) m6A CDS//exon       27773536
chr11:64645691-64645692(-) m6A CDS//exon       24284625//27773536
chr11:64645722-64645723(-) m6A CDS//exon       24284625//27773535//27773536
chr11:64646131-64646132(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate EHD1
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-3p
Interactor2: EHD1

Evidence Support:


Prediction-Evidence cRep//miRanda//RNAHybrid
Support Database RepTar//VmiReg

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