Basic Information:

  VIRBase ID:  

VHID00347594

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-3p:  MIMAT0003424          PCYT1A:  NM_005017     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-3p	PCYT1A
miRBase Accession/Entrez ID	MIMAT0003424	5130
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CCTA//CCTalpha//CT//CTA//CTPCT//PCYT1//SMDCRD

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCYT1A	chr3:195983580(-) A-I      intronic chr3:195983579(-) A-I      intronic chr3:195983496(-) A-I      intronic chr3:195960384(-) A-I      intronic chr3:195960377(-) A-I      intronic chr3:195957556(-) A-I      intronic chr3:195957493(-) A-I      intronic chr3:195983473(-) A-I      intronic chr3:195983359(-) A-I      intronic chr3:195983327(-) A-I      intronic chr3:195983279(-) A-I      intronic chr3:195983249(-) A-I      intronic chr3:195983198(-) A-I      intronic chr3:195981497(-) A-I      intronic chr3:195981489(-) A-I      intronic chr3:195981362(-) A-I      intronic chr3:195980206(-) A-I      intronic chr3:195980175(-) A-I      intronic chr3:195980123(-) A-I      intronic chr3:195980096(-) A-I      intronic chr3:195980042(-) A-I      intronic chr3:195980036(-) A-I      intronic chr3:195980004(-) A-I      intronic chr3:195979682(-) A-I      intronic chr3:195979678(-) A-I      intronic chr3:195979294(-) A-I      intronic chr3:195979292(-) A-I      intronic chr3:195979173(-) A-I      intronic chr3:195975865(-) A-I      intronic chr3:195975325(-) A-I      intronic chr3:195975295(-) A-I      intronic chr3:195973371(-) A-I      intronic chr3:195973357(-) A-I      intronic chr3:195972784(-) A-I      intronic chr3:195972214(-) A-I      intronic chr3:195972105(-) A-I      intronic chr3:195972098(-) A-I      intronic chr3:195970077(-) A-I      intronic chr3:195970074(-) A-I      intronic chr3:195970051(-) A-I      intronic chr3:195970034(-) A-I      intronic chr3:195970031(-) A-I      intronic chr3:195970017(-) A-I      intronic chr3:195970000(-) A-I      intronic chr3:195968272(-) A-I      intronic chr3:195961201(-) A-I      intronic chr3:195994397(-) A-I      intronic chr3:195972188(-) A-I      intronic chr3:195970137(-) A-I      intronic chr3:195961145(-) A-I      intronic chr3:195961130(-) A-I      intronic chr3:195961116(-) A-I      intronic chr3:195961109(-) A-I      intronic chr3:195961092(-) A-I      intronic chr3:195961070(-) A-I      intronic chr3:195961044(-) A-I      intronic chr3:195961043(-) A-I      intronic chr3:195961031(-) A-I      intronic chr3:195961028(-) A-I      intronic chr3:195960977(-) A-I      intronic chr3:195960972(-) A-I      intronic chr3:195960950(-) A-I      intronic chr3:195960949(-) A-I      intronic chr3:195960485(-) A-I      intronic chr3:195960461(-) A-I      intronic chr3:195960458(-) A-I      intronic chr3:195960448(-) A-I      intronic chr3:195960436(-) A-I      intronic chr3:195960423(-) A-I      intronic chr3:195983680(-) A-I      intronic chr3:195961002(-) A-I      intronic chr3:195986608(-) A-I      intronic chr3:196010138(-) A-I      intronic chr3:196013703(-) A-I      intronic chr3:196012324(-) A-I      intronic chr3:196012118(-) A-I      intronic chr3:196012095(-) A-I      intronic chr3:196010188(-) A-I      intronic chr3:196010169(-) A-I      intronic chr3:196010161(-) A-I      intronic chr3:196010086(-) A-I      intronic chr3:196006944(-) A-I      intronic chr3:196006939(-) A-I      intronic chr3:196006817(-) A-I      intronic chr3:196006811(-) A-I      intronic chr3:196004620(-) A-I      intronic chr3:195998506(-) A-I      intronic chr3:195997006(-) A-I      intronic chr3:195993558(-) A-I      intronic chr3:195993543(-) A-I      intronic chr3:195988584(-) A-I      intronic chr3:195988578(-) A-I      intronic chr3:195988575(-) A-I      intronic chr3:195987680(-) A-I      intronic chr3:195987613(-) A-I      intronic chr3:195986891(-) A-I      intronic chr3:195986890(-) A-I      intronic chr3:195985118(-) A-I      intronic chr3:195983629(-) A-I      intronic chr3:195983614(-) A-I      intronic chr3:195983604(-) A-I      intronic chr3:195963731(-) A-I      3'UTR chr3:195963741(-) A-I      3'UTR chr3:195963751(-) A-I      3'UTR chr3:195963756(-) A-I      3'UTR chr3:195963802(-) A-I      3'UTR chr3:195963675(-) A-I      3'UTR chr3:195963754(-) A-I      3'UTR chr3:195963630(-) A-I      3'UTR chr3:195963634(-) A-I      3'UTR chr3:195963635(-) A-I      3'UTR chr3:195963643(-) A-I      3'UTR chr3:195963649(-) A-I      3'UTR chr3:195963653(-) A-I      3'UTR chr3:195963666(-) A-I      3'UTR chr3:195963676(-) A-I      3'UTR chr3:195963702(-) A-I      3'UTR chr3:195963716(-) A-I      3'UTR chr3:195963717(-) A-I      3'UTR chr3:195963720(-) A-I      3'UTR chr3:195979211(-) A-I      intronic chr3:195985638(-) A-I      intronic chr3:195979385(-) A-I      intronic chr3:195979642(-) A-I      intronic chr3:195982457(-) A-I      intronic chr3:195972739(-) A-I      intronic chr3:195960443(-) A-I      intronic chr3:195967961(-) A-I      intronic chr3:195979964(-) A-I      intronic chr3:195975443(-) A-I      intronic chr3:195993655(-) A-I      intronic chr3:195972284(-) A-I      intronic chr3:195975380(-) A-I      intronic chr3:195986659(-) A-I      intronic chr3:195984993(-) A-I      intronic chr3:195968286(-) A-I      intronic chr3:195984990(-) A-I      intronic chr3:195989830(-) A-I      intronic chr3:196008761(-) A-I      intronic chr3:195983694(-) A-I      intronic chr3:195975826(-) A-I      intronic chr3:195985525(-) A-I      intronic chr3:195986458(-) A-I      intronic chr3:195976032(-) A-I      intronic chr3:195998006(-) A-I      intronic chr3:195968135(-) A-I      intronic chr3:196004736(-) A-I      intronic chr3:196013023(-) A-I      intronic chr3:195996817(-) A-I      intronic chr3:195994506(-) A-I      intronic chr3:195985587(-) A-I      intronic chr3:195979334(-) A-I      intronic chr3:195992204(-) A-I      intronic chr3:195981445(-) A-I      intronic chr3:195986987(-) A-I      intronic chr3:195987053(-) A-I      intronic chr3:195989838(-) A-I      intronic chr3:195968256(-) A-I      intronic chr3:195987074(-) A-I      intronic chr3:195967326(-) A-I      intronic chr3:195999220(-) A-I      intronic chr3:195972177(-) A-I      intronic chr3:196013010(-) A-I      intronic chr3:195979257(-) A-I      intronic chr3:195994330(-) A-I      intronic chr3:195990251(-) A-I      intronic chr3:195975749(-) A-I      intronic chr3:196006733(-) A-I      intronic chr3:195987677(-) A-I      intronic chr3:195976260(-) A-I      intronic chr3:195990668(-) A-I      intronic chr3:195979966(-) A-I      intronic chr3:195972710(-) A-I      intronic chr3:196008667(-) A-I      intronic chr3:195990243(-) A-I      intronic chr3:195999350(-) A-I      intronic chr3:195972192(-) A-I      intronic chr3:195972783(-) A-I      intronic chr3:196005789(-) A-I      intronic chr3:195996917(-) A-I      intronic chr3:195995566(-) A-I      intronic chr3:195993734(-) A-I      intronic chr3:195983483(-) A-I      intronic chr3:195967960(-) A-I      intronic chr3:196006037(-) A-I      intronic chr3:195986594(-) A-I      intronic chr3:195999471(-) A-I      intronic chr3:195975910(-) A-I      intronic chr3:195986471(-) A-I      intronic chr3:195975534(-) A-I      intronic chr3:195983575(-) A-I      intronic chr3:195986568(-) A-I      intronic chr3:195983181(-) A-I      intronic chr3:195976236(-) A-I      intronic chr3:195968336(-) A-I      intronic chr3:195993742(-) A-I      intronic chr3:195983665(-) A-I      intronic chr3:195986630(-) A-I      intronic chr3:195981170(-) A-I      intronic chr3:196008837(-) A-I      intronic chr3:195983705(-) A-I      intronic chr3:195996882(-) A-I      intronic chr3:195993087(-) A-I      intronic chr3:195988552(-) A-I      intronic chr3:195967339(-) A-I      intronic chr3:195972257(-) A-I      intronic chr3:195999256(-) A-I      intronic chr3:195994504(-) A-I      intronic chr3:195982558(-) A-I      intronic chr3:196013026(-) A-I      intronic chr3:195987061(-) A-I      intronic chr3:195960395(-) A-I      intronic chr3:195975522(-) A-I      intronic chr3:196008805(-) A-I      intronic chr3:195973374(-) A-I      intronic chr3:195975849(-) A-I      intronic chr3:195972658(-) A-I      intronic chr3:196010164(-) A-I      intronic chr3:195986603(-) A-I      intronic chr3:195990363(-) A-I      intronic chr3:195995542(-) A-I      intronic chr3:195978919(-) A-I      intronic chr3:196006743(-) A-I      intronic chr3:195985666(-) A-I      intronic chr3:196013759(-) A-I      intronic chr3:195983543(-) A-I      intronic chr3:196006075(-) A-I      intronic chr3:195990255(-) A-I      intronic chr3:195973402(-) A-I      intronic chr3:195975381(-) A-I      intronic chr3:195993222(-) A-I      intronic chr3:195975792(-) A-I      intronic chr3:195968291(-) A-I      intronic chr3:195986009(-) A-I      intronic chr3:195979992(-) A-I      intronic chr3:195983315(-) A-I      intronic chr3:195979640(-) A-I      intronic chr3:195975695(-) A-I      intronic chr3:196008723(-) A-I      intronic chr3:195983692(-) A-I      intronic chr3:195993612(-) A-I      intronic chr3:195987672(-) A-I      intronic chr3:195968302(-) A-I      intronic chr3:195983685(-) A-I      intronic chr3:195998034(-) A-I      intronic chr3:196008841(-) A-I      intronic chr3:195979256(-) A-I      intronic chr3:195992706(-) A-I      intronic chr3:195972151(-) A-I      intronic chr3:195970009(-) A-I      intronic chr3:195960422(-) A-I      intronic chr3:195983237(-) A-I      intronic chr3:195983527(-) A-I      intronic chr3:195970087(-) A-I      intronic chr3:195986523(-) A-I      intronic chr3:195986053(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PCYT1A	chr3:195968256(-) A-I intron -    22327324 chr3:195968336(-) A-I intron -    22327324 chr3:195967338(-) A-G intron -    22484847 chr3:195967339(-) A-G intron -    22484847 chr3:195967960(-) A-G intron -    22484847 chr3:195967961(-) A-G intron -    22484847 chr3:195968230(-) G-A intron -    22484847 chr3:195968256(-) A-G intron -    22484847 chr3:195968302(-) A-G intron -    22484847 chr3:195968336(-) A-G intron -    22484847 chr3:195970009(-) A-G intron -    22484847 chr3:195970087(-) A-G intron -    22484847 chr3:195975910(-) A-G intron -    22484847 chr3:195978919(-) A-G intron -    22484847 chr3:195979211(-) A-G intron -    22484847 chr3:195979992(-) A-G intron -    22484847 chr3:195981360(-) A-G intron -    22484847 chr3:195983181(-) A-G intron -    22484847 chr3:195983237(-) A-G intron -    22484847 chr3:195983239(-) A-G intron -    22484847 chr3:195983314(-) A-G intron -    22484847 chr3:195983315(-) A-G intron -    22484847 chr3:195983527(-) A-G intron -    22484847 chr3:195983543(-) A-G intron -    22484847 chr3:195983549(-) A-G intron -    22484847 chr3:195983575(-) A-G intron -    22484847 chr3:195983692(-) A-G intron -    22484847 chr3:195984993(-) A-G intron -    22484847 chr3:195985638(-) A-G intron -    22484847 chr3:195988561(-) A-G intron -    22484847 chr3:195992204(-) A-G intron -    22484847 chr3:195993612(-) A-G intron -    22484847 chr3:195993613(-) A-G intron -    22484847 chr3:196006075(-) A-G intron -    22484847 chr3:196013026(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCYT1A	chr3:195956926-195956927(-) m6A CDS//intron       27773535 chr3:195961403-195961404(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22575960//22608085 chr3:195961423-195961424(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22575960//22608085 chr3:195961473-195961474(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:195961487-195961488(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:195962398-195962399(-) m6A 3'UTR//intron       27773535 chr3:195963486-195963487(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963491-195963492(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963539-195963540(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963545-195963546(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963550-195963551(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963564-195963565(-) m6A 3'UTR//intron       24981863//27773535 chr3:195963633-195963634(-) m6A 3'UTR//intron       24981863//27773535 chr3:195964376-195964377(-) m6A 3'UTR//intron       24284625 chr3:195964425-195964426(-) m6A 3'UTR//intron       24284625 chr3:195964440-195964441(-) m6A 3'UTR//intron       24284625 chr3:195964496-195964497(-) m6A 3'UTR//intron       24284625//24981863//27773535 chr3:195964571-195964572(-) m6A 3'UTR//intron       27773535//22608085 chr3:195964711-195964712(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:195964748-195964749(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:195964816-195964817(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:195964865-195964866(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:195964887-195964888(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr3:195964907-195964908(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr3:195964945-195964946(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr3:195965220-195965221(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr3:195965357-195965358(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965404-195965405(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965410-195965411(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965419-195965420(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965426-195965427(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965443-195965444(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965460-195965461(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965468-195965469(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr3:195965562-195965563(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr3:195965638-195965639(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828 chr3:195965762-195965763(-) m6A CDS//exon//intron       24981863//27371828 chr3:195968867-195968868(-) m6A CDS//intron       27773535 chr3:195968915-195968916(-) m6A CDS//intron       27773535 chr3:195968937-195968938(-) m6A CDS//exon//intron       27773535 chr3:195997322-195997323(-) m1A CDS//exon       26863196//26863410 chr3:195997342-195997343(-) m6A CDS//exon       24981863//27773535//27371828 chr3:196014119-196014120(-) m6A 5'UTR//intron       25456834//24981863//27773535//27371828//22575960 chr3:196014432-196014433(-) m6A 5'UTR//exon//intron       25456834//24981863//27773535//27371828//22575960 chr3:196014450-196014451(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960 chr3:196014512-196014513(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//27371828 chr3:196014615-196014616(-) m6A 5'UTR//exon//intron       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PCYT1A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-3p
Interactor2: PCYT1A

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//RNAHybrid
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.